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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269595 (22 seq.)
>WENV180197752
OBAB01011011
[OBAB] human gut metagenome; faeces
109
182
+
Gly
GCC
[ENA]
¢þ
>WENV180455077
OBXO01000355
[OBXO] human gut metagenome; faeces
30641
30568
-
Gly
GCC
[ENA]
¢þ
>WENV180455122
OBXO01000415
[OBXO] human gut metagenome; faeces
35732
35660
-
Gly
GCC
[ENA]
¢þ
>WENV180455395
OBXO01002680
[OBXO] human gut metagenome; faeces
373
445
+
Gly
GCC
[ENA]
¢þ
>WENV180455409
OBXO01002888
[OBXO] human gut metagenome; faeces
5242
5169
-
Gly
GCC
[ENA]
¢þ
>WENV180455604
OBXO01014500
[OBXO] human gut metagenome; faeces
644
716
+
Gly
GCC
[ENA]
¢þ
>WENV183173459
OLPD01006879
[OLPD] human gut metagenome; faeces
669
741
+
Gly
GCC
[ENA]
¢þ
>C191128871
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
728665
728737
+
Gly
GCC
-
¡û
>C191128883
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
822620
822693
+
Gly
GCC
-
¡û
>C191128899
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1430974
1431046
+
Gly
GCC
-
¡û
>C191128923
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1909575
1909648
+
Gly
GCC
-
¡û
>W10118881
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
65549
65622
+
Gly
GCC
[ENA]
¡û
>W10118886
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
5517
5589
+
Gly
GCC
[ENA]
¡û
>W10118904
ADVF01000029
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
8423
8495
+
Gly
GCC
[ENA]
¡û
>W10118942
ADVF01000084
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
1030
1102
+
Gly
GCC
[ENA]
¡û
>C11105566
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1299560
1299633
+
Gly
GCC
[Ensembl]
¡û
>W11125053
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
65549
65622
+
Gly
GCC
[ENA]
¡û
>W11125058
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
5517
5589
+
Gly
GCC
[ENA]
¡û
>W11125076
ADVF01000029
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
8423
8495
+
Gly
GCC
[ENA]
¡û
>W11125114
ADVF01000084
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
1030
1102
+
Gly
GCC
[ENA]
¡û
>W1610046303
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
134794
134721
-
Gly
GCC
[ENA]
¡û
>W1710043099
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
134794
134721
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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