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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269634 (96 seq.)
>W1711055649
LRVC01000004
Bacillota
Megasphaera sp. MJR8396C [LRVC]
24552
24477
-
Glu
TTC
[ENA]
¡û
>W1711067300
LSDS01000015
Bacillota
Veillonellaceae bacterium DNF00751 [LSDS]
325
250
-
Glu
TTC
[ENA]
¡û
>W1711067358
LSDT01000025
Bacillota
Megasphaera hutchinsoni KA00182 [LSDT]
22923
22998
+
Glu
TTC
[ENA]
¡û
>W1711120525
LUGJ01000011
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
38210
38135
-
Glu
TTC
[ENA]
¡û
>W1711120532
LUGJ01000013
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
10179
10254
+
Glu
TTC
[ENA]
¡û
>W1711120553
LUGJ01000026
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
116
191
+
Glu
TTC
[ENA]
¡û
>W131251579
CAVO010000018
Bacillota
Megasphaera massiliensis NP3 [CAVO]
18575
18500
-
Glu
TTC
[ENA]
¡û
>W131251617
CAVO010000132
Bacillota
Megasphaera massiliensis NP3 [CAVO]
333
408
+
Glu
TTC
[ENA]
¡û
>C171098330
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2600308
2600233
-
Glu
TTC
-
¡û
>C171098337
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
94967
94892
-
Glu
TTC
-
¡û
>W131160385
AQWN01000010
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
104562
104487
-
Glu
TTC
[ENA]
¡û
>W131160391
AQWN01000012
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
76878
76803
-
Glu
TTC
[ENA]
¡û
>W131160394
AQWN01000014
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
33509
33434
-
Glu
TTC
[ENA]
¡û
>W131242944
CAOS01000001
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
161208
161133
-
Glu
TTC
[ENA]
¡û
>W131242998
CAOS01000013
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
280031
280106
+
Glu
TTC
[ENA]
¡û
>C008014
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2349174
2349249
+
Glu
TTC
[Ensembl]
¡û
>C008025
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3580891
3580816
-
Glu
TTC
[Ensembl]
¡û
>C008027
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3580689
3580614
-
Glu
TTC
[Ensembl]
¡û
>C008040
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2679654
2679579
-
Glu
TTC
[Ensembl]
¡û
>C018180
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
927794
927869
+
Glu
TTC
[Ensembl]
¡û
>WENV180289649
OBIU01000044
[OBIU] human gut metagenome; human gut
34221
34296
+
Glu
TTC
[ENA]
¢þ
>WENV180289756
OBIU01000112
[OBIU] human gut metagenome; human gut
48876
48801
-
Glu
TTC
[ENA]
¢þ
>WENV180740709
ODHE01133114
[ODHE] human metagenome; G_DNA_Stool
79
154
+
Glu
TTC
[ENA]
¢þ
>WENV180840910
ODKJ01016055
[ODKJ] human metagenome; G_DNA_Stool
1343
1268
-
Glu
TTC
[ENA]
¢þ
>WENV180942965
ODUA01000514
[ODUA] human metagenome; G_DNA_Posterior fornix
4423
4348
-
Glu
TTC
[ENA]
¢þ
>WENV181336825
OFME01000061
[OFME] human gut metagenome; human gut
76747
76672
-
Glu
TTC
[ENA]
¢þ
>WENV181340342
OFMH01000010
[OFMH] human gut metagenome; human gut
53137
53062
-
Glu
TTC
[ENA]
¢þ
>WENV181355020
OFMT01000266
[OFMT] human gut metagenome; human gut
48853
48778
-
Glu
TTC
[ENA]
¢þ
>WENV181396210
OFSC01000562
[OFSC] human gut metagenome; human gut
1679
1754
+
Glu
TTC
[ENA]
¢þ
>WENV181871124
OGWZ01000005
[OGWZ] human gut metagenome; faeces
342160
342085
-
Glu
TTC
[ENA]
¢þ
>WENV181871204
OGWZ01000017
[OGWZ] human gut metagenome; faeces
24517
24592
+
Glu
TTC
[ENA]
¢þ
>WENV182013894
OHBO01029302
[OHBO] human gut metagenome; feces
186
261
+
Glu
TTC
[ENA]
¢þ
>WENV182081100
OHGJ01005931
[OHGJ] human gut metagenome; feces
694
619
-
Glu
TTC
[ENA]
¢þ
>WENV182083555
OHGO01009697
[OHGO] human gut metagenome; feces
691
616
-
Glu
TTC
[ENA]
¢þ
>WENV182114867
OHIZ01014018
[OHIZ] human gut metagenome; feces
397
472
+
Glu
TTC
[ENA]
¢þ
>WENV182188339
OHOM01002776
[OHOM] human gut metagenome; feces
213
138
-
Glu
TTC
[ENA]
¢þ
>WENV182194968
OHPC01065672
[OHPC] human gut metagenome; feces
260
335
+
Glu
TTC
[ENA]
¢þ
>WENV182207977
OHPX01000145
[OHPX] human gut metagenome; feces
24281
24356
+
Glu
TTC
[ENA]
¢þ
>WENV182248836
OHSP01001100
[OHSP] human gut metagenome; feces
9457
9382
-
Glu
TTC
[ENA]
¢þ
>WENV182940897
OKVG01000117
[OKVG] human gut metagenome; human gut
56546
56471
-
Glu
TTC
[ENA]
¢þ
>WENV182941092
OKVG01000358
[OKVG] human gut metagenome; human gut
18824
18749
-
Glu
TTC
[ENA]
¢þ
>WENV182941290
OKVG01000951
[OKVG] human gut metagenome; human gut
1579
1654
+
Glu
TTC
[ENA]
¢þ
>WENV183026390
OLFU01001533
[OLFU] human gut metagenome; faeces
2473
2548
+
Glu
TTC
[ENA]
¢þ
>WENV183029557
OLFW01000562
[OLFW] human gut metagenome; faeces
20311
20236
-
Glu
TTC
[ENA]
¢þ
>WENV183032298
OLFY01000053
[OLFY] human gut metagenome; faeces
159278
159203
-
Glu
TTC
[ENA]
¢þ
>WENV183325826
OLVZ01002430
[OLVZ] human gut metagenome; faeces
9865
9940
+
Glu
TTC
[ENA]
¢þ
>WENV183485611
OMFQ01000351
[OMFQ] human gut metagenome; feces
18779
18704
-
Glu
TTC
[ENA]
¢þ
>WENV183637679
OQVH01001062
[OQVH] human gut metagenome; human gut
8975
8900
-
Glu
TTC
[ENA]
¢þ
>WENV170684236
LFRM01028031
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5169
5094
-
Glu
TTC
[ENA]
¢þ
>WENV170721430
LSQX01190164
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
51429
51504
+
Glu
TTC
[ENA]
¢þ
>C181166330
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2174999
2175074
+
Glu
TTC
-
¡û
>C181166344
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2624910
2624835
-
Glu
TTC
-
¡û
>C181166358
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
251920
251845
-
Glu
TTC
-
¡û
>C181166404
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2217647
2217722
+
Glu
TTC
-
¡û
>C181166418
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2637909
2637834
-
Glu
TTC
-
¡û
>C181166432
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
252563
252488
-
Glu
TTC
-
¡û
>W09105150
AAOP01000009
Bacillota
Desulforamulus reducens MI-1 [AAOP]
68821
68746
-
Glu
TTC
[ENA]
¡û
>W09105158
AAOP01000012
Bacillota
Desulforamulus reducens MI-1 [AAOP]
234
309
+
Glu
TTC
[ENA]
¡û
>W09105170
AAOP01000032
Bacillota
Desulforamulus reducens MI-1 [AAOP]
37951
38026
+
Glu
TTC
[ENA]
¡û
>W141779332
JONT01000002
Bacillota
Desulfofalx alkaliphila DSM 12257 [JONT]
61039
61114
+
Glu
TTC
[ENA]
¡û
>W1910004750
AWQQ01000036
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
8862
8937
+
Glu
TTC
[ENA]
¡û
>W1910004803
AWQQ01000162
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
2423
2498
+
Glu
TTC
[ENA]
¡û
>W1910004962
AWVY01000035
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
31331
31406
+
Glu
TTC
[ENA]
¡û
>W1910891899
NFMF01000004
Bacillota
Megasphaera genomosp. type_2 type_2 KA00229 [NFMF]
108476
108401
-
Glu
TTC
[ENA]
¡û
>W1910891913
NFMF01000006
Bacillota
Megasphaera genomosp. type_2 type_2 KA00229 [NFMF]
119171
119096
-
Glu
TTC
[ENA]
¡û
>W1911662029
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
760333
760258
-
Glu
TTC
[ENA]
¡û
>W10113812
ADGP01000009
Bacillota
Megasphaera genomosp. type_1 type_1 str. 28L [ADGP]
109302
109227
-
Glu
TTC
[ENA]
¡û
>W10113832
ADGP01000020
Bacillota
Megasphaera genomosp. type_1 type_1 str. 28L [ADGP]
208418
208343
-
Glu
TTC
[ENA]
¡û
>C10113255
CP002028
Bacillota
Thermincola potens JR [CP002028]
3094691
3094616
-
Glu
TTC
[Ensembl]
¡û
>C10113268
CP002028
Bacillota
Thermincola potens JR [CP002028]
2374847
2374772
-
Glu
TTC
[Ensembl]
¡û
>W11117148
ADGP01000009
Bacillota
Megasphaera genomosp. type_1 type_1 str. 28L [ADGP]
109302
109227
-
Glu
TTC
[ENA]
¡û
>W11117168
ADGP01000020
Bacillota
Megasphaera genomosp. type_1 type_1 str. 28L [ADGP]
208418
208343
-
Glu
TTC
[ENA]
¡û
>W11150390
AEVP01000026
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
24092
24167
+
Glu
TTC
[ENA]
¡û
>W1511706105
LGTE01000003
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
188687
188612
-
Glu
TTC
[ENA]
¡û
>W1511706112
LGTE01000009
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
50142
50217
+
Glu
TTC
[ENA]
¡û
>W11163943
AFIJ01000002
Bacillota
Megasphaera lornae UPII 199-6 [AFIJ]
1671
1746
+
Glu
TTC
[ENA]
¡û
>W11163964
AFIJ01000023
Bacillota
Megasphaera lornae UPII 199-6 [AFIJ]
70692
70617
-
Glu
TTC
[ENA]
¡û
>W11173919
AFUG01000008
Bacillota
Megasphaera sp. UPII 135-E [AFUG]
159580
159505
-
Glu
TTC
[ENA]
¡û
>W11173956
AFUG01000049
Bacillota
Megasphaera sp. UPII 135-E [AFUG]
88323
88248
-
Glu
TTC
[ENA]
¡û
>W1610605490
LFSA01000010
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
5169
5094
-
Glu
TTC
[ENA]
¡û
>W1610896695
LRVC01000004
Bacillota
Megasphaera sp. MJR8396C [LRVC]
24552
24477
-
Glu
TTC
[ENA]
¡û
>W1610907870
LSDS01000015
Bacillota
Veillonellaceae bacterium DNF00751 [LSDS]
325
250
-
Glu
TTC
[ENA]
¡û
>W1610907928
LSDT01000025
Bacillota
Megasphaera hutchinsoni KA00182 [LSDT]
22923
22998
+
Glu
TTC
[ENA]
¡û
>W1610931722
LUGJ01000011
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
38210
38135
-
Glu
TTC
[ENA]
¡û
>W1610931729
LUGJ01000013
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
10179
10254
+
Glu
TTC
[ENA]
¡û
>W1610931750
LUGJ01000026
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
116
191
+
Glu
TTC
[ENA]
¡û
>W1710084305
BDLQ01000004
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
1771
1696
-
Glu
TTC
[ENA]
¡û
>W1710084312
BDLQ01000016
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
13670
13745
+
Glu
TTC
[ENA]
¡û
>W1710084349
BDLQ01000058
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
64154
64229
+
Glu
TTC
[ENA]
¡û
>W1710084384
BDLR01000034
Bacillota
Carboxydocella sp. JDF658 [BDLR]
25587
25512
-
Glu
TTC
[ENA]
¡û
>W1710084395
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
13661
13736
+
Glu
TTC
[ENA]
¡û
>W1710084419
BDLR01000085
Bacillota
Carboxydocella sp. JDF658 [BDLR]
1795
1720
-
Glu
TTC
[ENA]
¡û
>W1710601639
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
97949
98024
+
Glu
TTC
[ENA]
¡û
>W1710601685
FUXM01000061
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
694
619
-
Glu
TTC
[ENA]
¡û
>W1710601696
FUXM01000079
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
244
169
-
Glu
TTC
[ENA]
¡û
>W1710726777
LFSA01000010
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
5169
5094
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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