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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269682 (9 seq.)
>WENV180013682
FMSI01127704
[FMSI] soil metagenome; Soil
142
216
+
Ala
TGC
[ENA]
¢þ
>WENV180036712
FVAA010278038
[FVAA] soil metagenome; Soil
276
202
-
Ala
TGC
[ENA]
¢þ
>WENV180346177
OBLN01034338
[OBLN] sediment metagenome; sediment
146
74
-
Ala
TGC
[ENA]
¢þ
>C191134815
CP035108
Deferribacterota
Geovibrio thiophilus DSM 11263 [CP035108]
2848817
2848745
-
Ala
TGC
-
¡û
>C191134821
CP035108
Deferribacterota
Geovibrio thiophilus DSM 11263 [CP035108]
2287579
2287507
-
Ala
TGC
-
¡û
>C11105821
CP002347
Deferribacterota
Calditerrivibrio nitroreducens DSM 19672 [CP002347]
2003111
2003037
-
Ala
TGC
[Ensembl]
¡û
>C11105829
CP002347
Deferribacterota
Calditerrivibrio nitroreducens DSM 19672 [CP002347]
1401427
1401353
-
Ala
TGC
[Ensembl]
¡û
>C11109332
CP002858
Deferribacterota
Flexistipes sinusarabici DSM 4947 [CP002858]
2249719
2249647
-
Ala
TGC
[Ensembl]
¡û
>C11109334
CP002858
Deferribacterota
Flexistipes sinusarabici DSM 4947 [CP002858]
2111908
2111836
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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