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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269757 (60 seq.)
>W1710798693
LJTV01000021
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_47 [LJTV]
22028
21953
-
Lys
TTT
[ENA]
¡û
>W1711621543
MPDF01000031
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
3160
3085
-
Lys
TTT
[ENA]
¡û
>W1711621544
MPDF01000031
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
3043
2968
-
Lys
TTT
[ENA]
¡û
>W1711621545
MPDF01000031
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
2937
2862
-
Lys
TTT
[ENA]
¡û
>W1711621546
MPDF01000031
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
2811
2736
-
Lys
TTT
[ENA]
¡û
>W1711621547
MPDF01000031
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
2714
2639
-
Lys
TTT
[ENA]
¡û
>W131179533
ARML01000110
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
79637
79562
-
Lys
TTT
[ENA]
¡û
>W131179537
ARML01000111
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
80
5
-
Lys
TTT
[ENA]
¡û
>W131214906
ATUO01000078
Gammaproteobacteria
Psychromonas hadalis ATCC BAA-638 [ATUO]
17916
17991
+
Lys
TTT
[ENA]
¡û
>W131214917
ATUO01000112
Gammaproteobacteria
Psychromonas hadalis ATCC BAA-638 [ATUO]
17
92
+
Lys
TTT
[ENA]
¡û
>W131221444
AUAM01000014
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
83
8
-
Lys
TTT
[ENA]
¡û
>W131221462
AUAM01000031
Gammaproteobacteria
Psychromonas aquimarina ATCC BAA-1526 [AUAM]
6
81
+
Lys
TTT
[ENA]
¡û
>C016515
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
922914
922989
+
Lys
TTT
[Ensembl]
¡û
>C016516
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
923154
923229
+
Lys
TTT
[Ensembl]
¡û
>C016517
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
923325
923400
+
Lys
TTT
[Ensembl]
¡û
>C016518
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
923510
923585
+
Lys
TTT
[Ensembl]
¡û
>C016519
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
923681
923756
+
Lys
TTT
[Ensembl]
¡û
>w015530
AAPG01000037
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
5093
5016
-
Lys
TTT
[ENA]
¡û
>w015529
AAPG01000037
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
5232
5155
-
Lys
TTT
[ENA]
¡û
>w015528
AAPG01000037
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
5374
5297
-
Lys
TTT
[ENA]
¡û
>w015527
AAPG01000037
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
5516
5439
-
Lys
TTT
[ENA]
¡û
>w015526
AAPG01000037
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
5659
5582
-
Lys
TTT
[ENA]
¡û
>w015525
AAPG01000037
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
5805
5728
-
Lys
TTT
[ENA]
¡û
>WENV180044207
LQAJ01022401
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
346
271
-
Lys
TTT
[ENA]
¢þ
>W141169731
AXWP01000034
Gammaproteobacteria
Psychromonas arctica DSM 14288 [AXWP]
7
82
+
Lys
TTT
[ENA]
¡û
>W141252239
CBRF010000292
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
5650
5575
-
Lys
TTT
[ENA]
¡û
>W09105815
AAQS01000023
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
35065
34990
-
Lys
TTT
[ENA]
¡û
>W09105816
AAQS01000023
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
34825
34750
-
Lys
TTT
[ENA]
¡û
>W09105817
AAQS01000023
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
34654
34579
-
Lys
TTT
[ENA]
¡û
>W09105818
AAQS01000023
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
34469
34394
-
Lys
TTT
[ENA]
¡û
>W09105819
AAQS01000023
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
34298
34223
-
Lys
TTT
[ENA]
¡û
>W1910871975
NDFH01000003
Gammaproteobacteria
Psychromonas sp. CD1 [NDFH]
850439
850364
-
Lys
TTT
[ENA]
¡û
>W1910871976
NDFH01000003
Gammaproteobacteria
Psychromonas sp. CD1 [NDFH]
850303
850228
-
Lys
TTT
[ENA]
¡û
>W1910871977
NDFH01000003
Gammaproteobacteria
Psychromonas sp. CD1 [NDFH]
850168
850093
-
Lys
CTT
[ENA]
¡û
>W1810154441
PIZM01000001
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
147095
147170
+
Lys
TTT
[ENA]
¡û
>W1810154442
PIZM01000001
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
147302
147377
+
Lys
TTT
[ENA]
¡û
>W1810154443
PIZM01000001
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
147597
147672
+
Lys
TTT
[ENA]
¡û
>W1810154444
PIZM01000001
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
147893
147968
+
Lys
TTT
[ENA]
¡û
>W1810154445
PIZM01000001
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
148187
148262
+
Lys
TTT
[ENA]
¡û
>W1810156950
PJBP01000116
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
100687
100612
-
Lys
TTT
[ENA]
¡û
>W1810156951
PJBP01000116
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
100522
100447
-
Lys
TTT
[ENA]
¡û
>W1810156952
PJBP01000116
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
100348
100273
-
Lys
TTT
[ENA]
¡û
>W1810156953
PJBP01000116
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
100196
100121
-
Lys
TTT
[ENA]
¡û
>W1810156954
PJBP01000116
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
99964
99889
-
Lys
TTT
[ENA]
¡û
>W1810157451
PJBZ01000040
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
17484
17559
+
Lys
TTT
[ENA]
¡û
>W1810157452
PJBZ01000040
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
17648
17723
+
Lys
TTT
[ENA]
¡û
>W1810157453
PJBZ01000040
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
17909
17984
+
Lys
TTT
[ENA]
¡û
>W1810157454
PJBZ01000040
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
18049
18124
+
Lys
TTT
[ENA]
¡û
>W1810157455
PJBZ01000040
Gammaproteobacteria
Psychromonas sp. Urea-02u-13 [PJBZ]
18213
18288
+
Lys
TTT
[ENA]
¡û
>W1810724844
QOCB01000131
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
43966
43891
-
Lys
TTT
[ENA]
¡û
>W1810724845
QOCB01000131
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
43708
43633
-
Lys
TTT
[ENA]
¡û
>W1810724846
QOCB01000131
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
43579
43504
-
Lys
TTT
[ENA]
¡û
>W1810724847
QOCB01000131
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
43321
43246
-
Lys
TTT
[ENA]
¡û
>C131013848
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2203618
2203543
-
Lys
TTT
[Ensembl]
¡û
>C131013849
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2203472
2203397
-
Lys
TTT
[Ensembl]
¡û
>C131013850
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2203329
2203254
-
Lys
TTT
[Ensembl]
¡û
>C131013851
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2203187
2203112
-
Lys
TTT
[Ensembl]
¡û
>C131013852
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2203045
2202970
-
Lys
TTT
[Ensembl]
¡û
>C131013853
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2202906
2202831
-
Lys
TTT
[Ensembl]
¡û
>W1610662650
LJTV01000021
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_47 [LJTV]
22028
21953
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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