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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269853 (88 seq.)
>W1710863399
LMFC01000001
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
781373
781446
+
Glu
CTC
[ENA]
¡û
>W1710863590
LMFG01000001
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
2001912
2001985
+
Glu
CTC
[ENA]
¡û
>W1710863678
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
383829
383904
+
Glu
CTC
[ENA]
¡û
>W1710868734
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
2429198
2429271
+
Glu
CTC
[ENA]
¡û
>W1710874046
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
427545
427620
+
Glu
CTC
[ENA]
¡û
>W1710874877
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
649826
649751
-
Glu
CTC
[ENA]
¡û
>W1710875651
LMOO01000001
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
1028404
1028331
-
Glu
CTC
[ENA]
¡û
>W1710877706
LMQI01000003
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
653829
653902
+
Glu
CTC
[ENA]
¡û
>W1710880882
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
235467
235542
+
Glu
CTC
[ENA]
¡û
>W1710914203
LNTD01000245
Actinomycetota
Cellulomonas sp. B6 [LNTD]
9551
9478
-
Glu
CTC
[ENA]
¡û
>W1710914207
LNTD01000276
Actinomycetota
Cellulomonas sp. B6 [LNTD]
16208
16281
+
Glu
CTC
[ENA]
¡û
>W131217865
ATXE01000002
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
58273
58346
+
Glu
CTC
[ENA]
¡û
>W1711503076
MKTH01000008
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
8648
8573
-
Glu
CTC
[ENA]
¡û
>W1711503121
MKTI01000005
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
343405
343332
-
Glu
CTC
[ENA]
¡û
>W1712056183
NFZP01000074
Actinomycetota
Cellulomonas iranensis [NFZP]
4499
4572
+
Glu
CTC
[ENA]
¡û
>W131190798
ASEP01000090
Actinomycetota
Nocardioides sp. CF8 [ASEP]
15200
15125
-
Glu
CTC
[ENA]
¡û
>W131227100
AUEW01000013
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
42533
42606
+
Glu
CTC
[ENA]
¡û
>W131227894
AUFN01000010
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
762884
762809
-
Glu
CTC
[ENA]
¡û
>W131227587
AUFG01000045
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
8640
8713
+
Glu
CTC
[ENA]
¡û
>WENV180000032
CZKA01000029
[CZKA] metagenome; liquid mineral medium
66833
66910
+
Glu
CTC
[ENA]
¢þ
>WENV181297410
OFHK01040185
[OFHK] soil metagenome; Clay
872
799
-
Glu
CTC
[ENA]
¢þ
>WENV182584885
OJHG01022310
[OJHG] seawater metagenome; Sea water
264
191
-
Glu
CTC
[ENA]
¢þ
>WENV183062384
OLID01006068
[OLID] seawater metagenome; Sea water
972
899
-
Glu
CTC
[ENA]
¢þ
>WENV183726787
PJTO01000173
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
41966
41893
-
Glu
CTC
[ENA]
¢þ
>WENV183728229
PJTQ01000003
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
319486
319413
-
Glu
CTC
[ENA]
¢þ
>WENV183729643
PJTR01000001
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
315640
315567
-
Glu
CTC
[ENA]
¢þ
>WENV183731523
PJTT01000014
[PJTT] soil metagenome; Soil (2) enriched on wood chips
31419
31346
-
Glu
CTC
[ENA]
¢þ
>WENV183731876
PJTU01000001
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
315640
315567
-
Glu
CTC
[ENA]
¢þ
>WENV183732206
PJTW01000003
[PJTW] soil metagenome; Soil enriched on wood chips
315640
315567
-
Glu
CTC
[ENA]
¢þ
>WENV183734323
PJTZ01002003
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
173
100
-
Glu
CTC
[ENA]
¢þ
>WENV183735973
PJUB01021500
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
92
165
+
Glu
CTC
[ENA]
¢þ
>WENV183736281
PJUC01000384
[PJUC] soil metagenome; Soil enriched on filter paper
16366
16293
-
Glu
CTC
[ENA]
¢þ
>WENV183737400
PJUD01006342
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
836
909
+
Glu
CTC
[ENA]
¢þ
>WENV183739769
PJUF01000007
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
450311
450384
+
Glu
CTC
[ENA]
¢þ
>WENV183742985
PJUJ01000004
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
315640
315567
-
Glu
CTC
[ENA]
¢þ
>WENV183744522
PJUL01000003
[PJUL] feces metagenome; Chicken feces enriched on filter paper
315640
315567
-
Glu
CTC
[ENA]
¢þ
>W141428908
JEOE01000047
Actinomycetota
Cellulomonas sp. HZM [JEOE]
150
77
-
Glu
CTC
[ENA]
¡û
>WENV170961692
MLJW01000541
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4523
4596
+
Glu
CTC
[ENA]
¢þ
>C181119559
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
1345565
1345638
+
Glu
CTC
-
¡û
>C191007085
AP019307
Actinomycetota
Nocardioides baekrokdamisoli KCTC 39748 [AP019307]
2485143
2485216
+
Glu
CTC
-
¡û
>C191164670
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
1329954
1330027
+
Glu
CTC
-
¡û
>C191210071
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
2726676
2726603
-
Glu
CTC
-
¡û
>W141564152
JIAN01000006
Actinomycetota
Cellulomonas sp. URHE0023 [JIAN]
760907
760834
-
Glu
CTC
[ENA]
¡û
>W09108565
ABTJ01000096
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
5501
5574
+
Glu
CTC
[ENA]
¡û
>W1910129182
BHYL01000103
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
1878
1951
+
Glu
CTC
[ENA]
¡û
>W1910155459
BIMR01000011
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
974
1047
+
Glu
CTC
[ENA]
¡û
>W1910181027
BJLP01000002
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
48817
48744
-
Glu
CTC
[ENA]
¡û
>W1910181080
BJLQ01000005
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
49259
49186
-
Glu
CTC
[ENA]
¡û
>W1910181153
BJLR01000030
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
310535
310462
-
Glu
CTC
[ENA]
¡û
>W1911768065
QXFN01000003
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
618255
618328
+
Glu
CTC
[ENA]
¡û
>W1810427520
PYXZ01000004
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
5039
4966
-
Glu
CTC
[ENA]
¡û
>W1810462617
PZYX01000002
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
402874
402801
-
Glu
CTC
[ENA]
¡û
>W1810568793
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
2516636
2516709
+
Glu
CTC
[ENA]
¡û
>W1810756451
QPFD01000003
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
417310
417237
-
Glu
CTC
[ENA]
¡û
>W1810918542
QWKP01000205
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
36807
36880
+
Glu
CTC
[ENA]
¡û
>C151090466
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
3248482
3248409
-
Glu
CTC
-
¡û
>C10103451
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
2589932
2589859
-
Glu
CTC
[Ensembl]
¡û
>C11105042
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
2726661
2726588
-
Glu
CTC
[Ensembl]
¡û
>C11105116
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
1266856
1266929
+
Glu
CTC
[Ensembl]
¡û
>W1511595517
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
1488668
1488595
-
Glu
CTC
[ENA]
¡û
>W11155951
AFAQ01001796
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
1203
1130
-
Glu
CTC
[ENA]
¡û
>W1511683477
LFKW01000112
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
180
253
+
Glu
CTC
[ENA]
¡û
>W1610029829
AXNT01000086
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
1350
1277
-
Glu
CTC
[ENA]
¡û
>W1610051518
BBGX01001215
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
209
136
-
Glu
CTC
[ENA]
¡û
>W1610051551
BBGY01001006
Actinomycetota
Cellulomonas composti JCM 14898 [BBGY]
414
487
+
Glu
CTC
[ENA]
¡û
>W1610051802
BBHG01000982
Actinomycetota
Cellulomonas chitinilytica JCM 16927 [BBHG]
183
110
-
Glu
CTC
[ENA]
¡û
>W1610068113
BCRB01000065
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
11621
11548
-
Glu
CTC
[ENA]
¡û
>W1610068503
BCRJ01000097
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
13285
13210
-
Glu
CTC
[ENA]
¡û
>W1610207211
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
113442
113515
+
Glu
CTC
[ENA]
¡û
>W1610725745
LMFC01000001
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
781373
781446
+
Glu
CTC
[ENA]
¡û
>W1610725936
LMFG01000001
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
2001912
2001985
+
Glu
CTC
[ENA]
¡û
>W1610726024
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
383829
383904
+
Glu
CTC
[ENA]
¡û
>W1610731080
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
2429198
2429271
+
Glu
CTC
[ENA]
¡û
>W1610736392
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
427545
427620
+
Glu
CTC
[ENA]
¡û
>W1610737223
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
649826
649751
-
Glu
CTC
[ENA]
¡û
>W1610737997
LMOO01000001
Actinomycetota
Cellulomonas sp. Leaf334 [LMOO]
1028404
1028331
-
Glu
CTC
[ENA]
¡û
>W1610740052
LMQI01000003
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
653829
653902
+
Glu
CTC
[ENA]
¡û
>W1610743228
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
235467
235542
+
Glu
CTC
[ENA]
¡û
>W1610772562
LNTD01000245
Actinomycetota
Cellulomonas sp. B6 [LNTD]
9551
9478
-
Glu
CTC
[ENA]
¡û
>W1610772566
LNTD01000276
Actinomycetota
Cellulomonas sp. B6 [LNTD]
16208
16281
+
Glu
CTC
[ENA]
¡û
>W1710027157
AXNT01000086
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
1350
1277
-
Glu
CTC
[ENA]
¡û
>W1710047896
BBGX01001215
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
209
136
-
Glu
CTC
[ENA]
¡û
>W1710047929
BBGY01001006
Actinomycetota
Cellulomonas composti JCM 14898 [BBGY]
414
487
+
Glu
CTC
[ENA]
¡û
>W1710048180
BBHG01000982
Actinomycetota
Cellulomonas chitinilytica JCM 16927 [BBHG]
183
110
-
Glu
CTC
[ENA]
¡û
>W1710065486
BCRB01000065
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
11621
11548
-
Glu
CTC
[ENA]
¡û
>W1710065876
BCRJ01000097
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
13285
13210
-
Glu
CTC
[ENA]
¡û
>W1710207905
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
113442
113515
+
Glu
CTC
[ENA]
¡û
>W1710566735
FOSE01000002
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
817294
817221
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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