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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269997 (17 seq.)
>W131186311
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
3021451
3021526
+
Asn
GTT
[ENA]
¡û
>W131218795
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
1304820
1304745
-
Asn
GTT
[ENA]
¡û
>WENV180309198
OBJR01668811
[OBJR] soil metagenome; soil
31
106
+
Asn
GTT
[ENA]
¢þ
>W08008854
ABLP01000006
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
30976
30904
-
Asn
GTT
[ENA]
¡û
>C08001588
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
2438863
2438938
+
Asn
GTT
[Ensembl]
¡û
>WENV170648928
JRHI01003867
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
7980
7905
-
Asn
GTT
[ENA]
¢þ
>C191028880
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
3052858
3052783
-
Asn
GTT
-
¡û
>C191029921
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
2858135
2858210
+
Asn
GTT
-
¡û
>C191220315
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
102378
102453
+
Asn
GTT
-
¡û
>C191221054
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
829628
829703
+
Asn
GTT
-
¡û
>W141815723
JQJH01000015
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
47169
47094
-
Asn
GTT
[ENA]
¡û
>W141817291
JQKO01000009
Alphaproteobacteria
Methylocapsa aurea [JQKO]
89632
89557
-
Asn
GTT
[ENA]
¡û
>C09107885
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
84568
84643
+
Asn
GTT
[Ensembl]
¡û
>W1810068780
PDZR01000002
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
231201
231126
-
Asn
GTT
[ENA]
¡û
>W1810884383
QUMO01000006
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
96781
96706
-
Asn
GTT
[ENA]
¡û
>WENV11100052
ADWX01013460
Ant fungus garden metagenome, Atta colombica fungus garden
227
152
-
Asn
GTT
[ENA]
¡û
>W1710567162
FOSN01000003
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
213639
213714
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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