This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270791 (47 seq.)
>PL171000635
CP006651
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 plasmid:pAMI1
34744
34820
+
Met
CAT
[ENA]
¡û
>WENV180044433
MOXG01000298
[MOXG] mollusc metagenome; Phylotype C (NB3); bacterial symbionts from gill
1256
1332
+
fMet
CAT
[ENA]
¢þ
>WENV180044455
MOXG01011967
[MOXG] mollusc metagenome; Phylotype C (NB3); bacterial symbionts from gill
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV170369859
CETR01040396
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
521
597
+
Met
CAT
[ENA]
¢þ
>WENV170476090
CEVI01069873
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
403
479
+
Met
CAT
[ENA]
¢þ
>WENV170476901
CEVJ01002848
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
542
618
+
Met
CAT
[ENA]
¢þ
>C181117182
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
3026579
3026655
+
Met
CAT
-
¡û
>C181117185
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
3283256
3283332
+
Met
CAT
-
¡û
>C181119655
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
43713
43789
+
Met
CAT
-
¡û
>C181119677
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
2948865
2948941
+
Met
CAT
-
¡û
>C181194160
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
837603
837679
+
Met
CAT
-
¡û
>C181194197
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
80904
80828
-
Met
CAT
-
¡û
>C181203429
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
155784
155708
-
Met
CAT
-
¡û
>C191131961
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
1402886
1402962
+
Met
CAT
-
¡û
>C191131982
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2968922
2968846
-
Met
CAT
-
¡û
>C191132003
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
186803
186727
-
Met
CAT
-
¡û
>W141558863
JHWH01000003
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
4890
4966
+
Met
CAT
[ENA]
¡û
>C141006313
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
74376
74452
+
Met
CAT
[Ensembl]
¡û
>C141006316
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
161594
161670
+
Met
CAT
[Ensembl]
¡û
>C141006343
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
2910544
2910468
-
Met
CAT
[Ensembl]
¡û
>W1910547048
FZNM01000001
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
12
88
+
Met
CAT
[ENA]
¡û
>W1910547090
FZNM01000023
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
17667
17591
-
Met
CAT
[ENA]
¡û
>W1910547093
FZNM01000028
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
84
8
-
Met
CAT
[ENA]
¡û
>W1810697142
QLUV01000031
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
5730
5806
+
Met
CAT
[ENA]
¡û
>W10106949
ACYY01000039
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
5539
5615
+
Met
CAT
[ENA]
¡û
>W1510013668
BBPH01000068
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
77
1
-
Met
CAT
[ENA]
¡û
>W1510013682
BBPH01000117
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
18323
18247
-
Met
CAT
[ENA]
¡û
>W1510013688
BBPH01000144
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
18671
18595
-
Met
CAT
[ENA]
¡û
>W1510013691
BBPH01000186
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
1951
1875
-
Met
CAT
[ENA]
¡û
>W11109238
ACYY01000039
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
5539
5615
+
Met
CAT
[ENA]
¡û
>W1511348662
JRKP01000078
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
15870
15794
-
Met
CAT
[ENA]
¡û
>W1511348764
JRKR01000292
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
752
676
-
Met
CAT
[ENA]
¡û
>W1511348784
JRKS01000013
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
49
125
+
Met
CAT
[ENA]
¡û
>W1511348807
JRKS01000111
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
79
3
-
Met
CAT
[ENA]
¡û
>W1511348809
JRKS01000125
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
49
125
+
Met
CAT
[ENA]
¡û
>W1511518718
JXYF01000104
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
5592
5668
+
Met
CAT
[ENA]
¡û
>W1511526790
JYGY01000002
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
880453
880529
+
Met
CAT
[ENA]
¡û
>W1511526803
JYGY01000004
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
5593
5669
+
Met
CAT
[ENA]
¡û
>W1511526807
JYGY01000004
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
395100
395024
-
Met
CAT
[ENA]
¡û
>W1511526810
JYGY01000005
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
30
106
+
Met
CAT
[ENA]
¡û
>W1511526815
JYGY01000005
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
379302
379378
+
Met
CAT
[ENA]
¡û
>W1710508070
FMVT01000001
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
272
348
+
Met
CAT
[ENA]
¡û
>W1710508110
FMVT01000024
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
25945
25869
-
Met
CAT
[ENA]
¡û
>W1710508111
FMVT01000028
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
251
327
+
Met
CAT
[ENA]
¡û
>W1710508114
FMVT01000031
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
3917
3993
+
Met
CAT
[ENA]
¡û
>W1710528232
FNNA01000009
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
46
122
+
Met
CAT
[ENA]
¡û
>W1710563609
FOPU01000061
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
47
123
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK