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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270809 (116 seq.)
>W1711183550
LWLC01000036
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
57319
57245
-
Pro
GGG
[ENA]
¡û
>W1711210345
LXIC01000012
Actinomycetota
Streptomyces sp. RTd22 [LXIC]
175702
175626
-
Pro
GGG
[ENA]
¡û
>W1711317406
MAXF01000222
Actinomycetota
Streptomyces sparsogenes [MAXF]
104279
104355
+
Pro
GGG
[ENA]
¡û
>W1711724864
MTQO01000030
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
55434
55508
+
Pro
GGG
[ENA]
¡û
>W1711724930
MTQP01000048
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
69485
69559
+
Pro
GGG
[ENA]
¡û
>W1711750764
MUNE01000322
Actinomycetota
Streptomyces milbemycinicus [MUNE]
18818
18742
-
Pro
GGG
[ENA]
¡û
>W1711766505
MUYM01000015
Actinomycetota
Lentzea kentuckyensis [MUYM]
168795
168721
-
Pro
GGG
[ENA]
¡û
>C171051041
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
124257
124183
-
Pro
GGG
-
¡û
>W141000358
ACQP01000506
Actinomycetota
Kutzneria sp. 744 [ACQP]
39330
39256
-
Pro
GGG
[ENA]
¡û
>WENV180220346
OBAS01049763
[OBAS] human gut metagenome; human gut
595
519
-
Pro
GGG
[ENA]
¢þ
>WENV180238819
OBDA01040627
[OBDA] human gut metagenome; human gut
100
24
-
Pro
GGG
[ENA]
¢þ
>WENV180245479
OBDM01041907
[OBDM] human gut metagenome; human gut
140
216
+
Pro
GGG
[ENA]
¢þ
>WENV180530876
OCHK01011552
[OCHK] human gut metagenome; human gut
1528
1604
+
Pro
GGG
[ENA]
¢þ
>WENV180532394
OCHL01000542
[OCHL] human gut metagenome; human gut
11268
11192
-
Pro
GGG
[ENA]
¢þ
>WENV180539165
OCHO01109948
[OCHO] human gut metagenome; human gut
135
59
-
Pro
GGG
[ENA]
¢þ
>WENV180619773
OCQB01011434
[OCQB] human gut metagenome; human gut
443
367
-
Pro
GGG
[ENA]
¢þ
>WENV180772835
ODIH01296544
[ODIH] human metagenome; G_DNA_Stool
86
10
-
Pro
GGG
[ENA]
¢þ
>WENV181349246
OFMN01030007
[OFMN] human gut metagenome; human gut
607
531
-
Pro
GGG
[ENA]
¢þ
>WENV181419103
OGCM01042923
[OGCM] human gut metagenome; human gut
174
98
-
Pro
GGG
[ENA]
¢þ
>WENV181440524
OGDN01001327
[OGDN] human gut metagenome; human gut
18356
18432
+
Pro
GGG
[ENA]
¢þ
>WENV181663577
OGOH01036014
[OGOH] human gut metagenome; faeces
1012
1088
+
Pro
GGG
[ENA]
¢þ
>WENV181664360
OGOI01002380
[OGOI] human gut metagenome; faeces
6986
7062
+
Pro
GGG
[ENA]
¢þ
>WENV181669955
OGOM01000540
[OGOM] human gut metagenome; faeces
20490
20414
-
Pro
GGG
[ENA]
¢þ
>WENV181673815
OGOO01010940
[OGOO] human gut metagenome; faeces
2314
2238
-
Pro
GGG
[ENA]
¢þ
>WENV181681445
OGOU01000001
[OGOU] human gut metagenome; faeces
240339
240415
+
Pro
GGG
[ENA]
¢þ
>WENV181703296
OGPJ01006154
[OGPJ] human gut metagenome; faeces
5762
5686
-
Pro
GGG
[ENA]
¢þ
>WENV181704772
OGPK01000868
[OGPK] human gut metagenome; faeces
26439
26515
+
Pro
GGG
[ENA]
¢þ
>WENV181710237
OGPN01039055
[OGPN] human gut metagenome; faeces
598
674
+
Pro
GGG
[ENA]
¢þ
>WENV181722997
OGPW01000952
[OGPW] human gut metagenome; faeces
21272
21348
+
Pro
GGG
[ENA]
¢þ
>WENV181738050
OGQI01001271
[OGQI] human gut metagenome; faeces
4314
4390
+
Pro
GGG
[ENA]
¢þ
>WENV181745787
OGQN01000005
[OGQN] human gut metagenome; faeces
10208
10132
-
Pro
GGG
[ENA]
¢þ
>WENV181755905
OGQT01000001
[OGQT] human gut metagenome; faeces
334375
334451
+
Pro
GGG
[ENA]
¢þ
>WENV181773501
OGRE01000769
[OGRE] human gut metagenome; faeces
15389
15465
+
Pro
GGG
[ENA]
¢þ
>WENV181799024
OGRY01000016
[OGRY] human gut metagenome; faeces
126316
126240
-
Pro
GGG
[ENA]
¢þ
>WENV181812091
OGTB01000032
[OGTB] human gut metagenome; faeces
106237
106161
-
Pro
GGG
[ENA]
¢þ
>WENV181825646
OGUL01000992
[OGUL] human gut metagenome; faeces
4868
4944
+
Pro
GGG
[ENA]
¢þ
>WENV181914874
OGYF01001632
[OGYF] human gut metagenome; faeces
17688
17612
-
Pro
GGG
[ENA]
¢þ
>WENV181938441
OGYW01007976
[OGYW] human gut metagenome; faeces
112
36
-
Pro
GGG
[ENA]
¢þ
>WENV182131265
OHKC01018052
[OHKC] human gut metagenome; feces
556
632
+
Pro
GGG
[ENA]
¢þ
>WENV182203682
OHPP01055450
[OHPP] human gut metagenome; feces
287
211
-
Pro
GGG
[ENA]
¢þ
>WENV182299622
OHWK01024960
[OHWK] human gut metagenome; feces
263
187
-
Pro
GGG
[ENA]
¢þ
>WENV182307074
OHXD01025138
[OHXD] human gut metagenome; feces
24
100
+
Pro
GGG
[ENA]
¢þ
>WENV182519497
OIWP01016734
[OIWP] human gut metagenome; faeces
852
928
+
Pro
GGG
[ENA]
¢þ
>WENV182681044
OJNV01000001
[OJNV] human gut metagenome; human gut
184971
185047
+
Pro
GGG
[ENA]
¢þ
>WENV182682755
OJNW01008684
[OJNW] human gut metagenome; human gut
806
730
-
Pro
GGG
[ENA]
¢þ
>WENV182744562
OJQR01010621
[OJQR] human gut metagenome; stool sample
1180
1256
+
Pro
GGG
[ENA]
¢þ
>WENV182942713
OKVH01003808
[OKVH] human gut metagenome; human gut
3316
3392
+
Pro
GGG
[ENA]
¢þ
>WENV183111420
OLNO01019392
[OLNO] human gut metagenome; faeces
1388
1312
-
Pro
GGG
[ENA]
¢þ
>WENV183125004
OLNY01000001
[OLNY] human gut metagenome; faeces
221197
221273
+
Pro
GGG
[ENA]
¢þ
>WENV183137654
OLOH01000002
[OLOH] human gut metagenome; faeces
153388
153464
+
Pro
GGG
[ENA]
¢þ
>WENV183147149
OLON01000001
[OLON] human gut metagenome; faeces
444517
444441
-
Pro
GGG
[ENA]
¢þ
>WENV183153409
OLOR01000060
[OLOR] human gut metagenome; faeces
81475
81551
+
Pro
GGG
[ENA]
¢þ
>WENV183167095
OLOZ01000001
[OLOZ] human gut metagenome; faeces
469273
469197
-
Pro
GGG
[ENA]
¢þ
>WENV183168577
OLPA01000001
[OLPA] human gut metagenome; faeces
78603
78527
-
Pro
GGG
[ENA]
¢þ
>WENV183172807
OLPD01000026
[OLPD] human gut metagenome; faeces
15478
15554
+
Pro
GGG
[ENA]
¢þ
>WENV183180948
OLPI01001891
[OLPI] human gut metagenome; faeces
6647
6723
+
Pro
GGG
[ENA]
¢þ
>WENV183188783
OLPQ01000001
[OLPQ] human gut metagenome; faeces
235912
235988
+
Pro
GGG
[ENA]
¢þ
>WENV183198950
OLPV01008308
[OLPV] human gut metagenome; faeces
1705
1629
-
Pro
GGG
[ENA]
¢þ
>WENV183199548
OLPW01000007
[OLPW] human gut metagenome; faeces
64514
64590
+
Pro
GGG
[ENA]
¢þ
>WENV183200735
OLPW01004224
[OLPW] human gut metagenome; faeces
4922
4998
+
Pro
GGG
[ENA]
¢þ
>WENV183229928
OLQT01000020
[OLQT] human gut metagenome; faeces
127214
127138
-
Pro
GGG
[ENA]
¢þ
>WENV183251366
OLRH01044088
[OLRH] human gut metagenome; faeces
159
83
-
Pro
GGG
[ENA]
¢þ
>WENV183264402
OLRR01018747
[OLRR] human gut metagenome; faeces
548
472
-
Pro
GGG
[ENA]
¢þ
>WENV183271679
OLRW01000417
[OLRW] human gut metagenome; faeces
35814
35890
+
Pro
GGG
[ENA]
¢þ
>WENV183281474
OLSC01000002
[OLSC] human gut metagenome; faeces
193209
193133
-
Pro
GGG
[ENA]
¢þ
>WENV183294796
OLSL01000001
[OLSL] human gut metagenome; faeces
169816
169892
+
Pro
GGG
[ENA]
¢þ
>WENV183296615
OLSM01000041
[OLSM] human gut metagenome; faeces
57939
58015
+
Pro
GGG
[ENA]
¢þ
>WENV183518861
OMNT01000001
[OMNT] human gut metagenome; faeces
437551
437475
-
Pro
GGG
[ENA]
¢þ
>WENV183773267
PPYF01026604
[PPYF] human gut metagenome; stool from patient with Crohn's disease
81083
81159
+
Pro
GGG
[ENA]
¢þ
>WENV170010943
APMI01035714
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2516
2442
-
Pro
GGG
[ENA]
¢þ
>WENV170011437
APMI01065645
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2734
2660
-
Pro
GGG
[ENA]
¢þ
>WENV170103940
CEAZ01012470
[CEAZ] gut metagenome; human stools
193
269
+
Pro
GGG
[ENA]
¢þ
>C181081513
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
1759866
1759940
+
Pro
GGG
-
¡û
>C191064786
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
1770347
1770421
+
Pro
GGG
-
¡û
>W09108109
ABTA01000002
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
391061
390987
-
Pro
GGG
[ENA]
¡û
>W09120882
ACEX01000635
Actinomycetota
Streptomyces himastatinicus ATCC 53653 [ACEX]
4321
4397
+
Pro
GGG
[ENA]
¡û
>W141757615
JNYA01000567
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
6480
6554
+
Pro
GGG
[ENA]
¡û
>W141757983
JNYH01000638
Actinomycetota
Kutzneria albida [JNYH]
6024
5950
-
Pro
GGG
[ENA]
¡û
>W141758262
JNYM01000713
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
76
2
-
Pro
GGG
[ENA]
¡û
>W141758395
JNYO01000037
Actinomycetota
Saccharothrix syringae [JNYO]
43641
43715
+
Pro
GGG
[ENA]
¡û
>W141760457
JOAA01000037
Actinomycetota
Rhodococcus rhodnii [JOAA]
58825
58899
+
Pro
GGG
[ENA]
¡û
>W141766530
JOEA01000019
Actinomycetota
Lentzea albidocapillata [JOEA]
120353
120427
+
Pro
GGG
[ENA]
¡û
>W141768621
JOFI01000018
Actinomycetota
Lentzea aerocolonigenes [JOFI]
74549
74623
+
Pro
GGG
[ENA]
¡û
>W141771476
JOHE01001164
Actinomycetota
Lentzea aerocolonigenes [JOHE]
6498
6424
-
Pro
GGG
[ENA]
¡û
>C09100627
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
1781567
1781641
+
Pro
GGG
[Ensembl]
¡û
>W1910870370
NCSM01000016
Actinomycetota
Streptomyces sp. NBS 14/10 [NCSM]
188346
188422
+
Pro
GGG
[ENA]
¡û
>W1911679527
QHKI01000068
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
27868
27942
+
Pro
GGG
[ENA]
¡û
>W1810592220
QFWW01000029
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
366417
366343
-
Pro
GGG
[ENA]
¡û
>W1810597172
QGHB01000008
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
337956
337882
-
Pro
GGG
[ENA]
¡û
>W1810697043
QLTT01000015
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
71068
71142
+
Pro
GGG
[ENA]
¡û
>W1810735376
QOIM01000026
Actinomycetota
Streptomyces reniochalinae LHW50302 [QOIM]
232516
232590
+
Pro
GGG
[ENA]
¡û
>W1810763049
QQAU01000011
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
140047
140121
+
Pro
GGG
[ENA]
¡û
>W1810885791
QUNO01000016
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
280927
281001
+
Pro
GGG
[ENA]
¡û
>C151017629
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
5712834
5712908
+
Pro
GGG
[Ensembl]
¡û
>W1510013138
BBOJ01000010
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
285431
285357
-
Pro
GGG
[ENA]
¡û
>W1510073651
CDME01000017
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
199555
199481
-
Pro
GGG
[ENA]
¡û
>W1511529131
JYJG01000029
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
22923
22997
+
Pro
GGG
[ENA]
¡û
>W1511697457
LGDY01000100
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
86697
86771
+
Pro
GGG
[ENA]
¡û
>C161045502
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
3386959
3387033
+
Pro
GGG
[Ensembl]
¡û
>C161090281
CP015726
Actinomycetota
Streptomyces sp. RTd22 [CP015726]
2467980
2467904
-
Pro
GGG
-
¡û
>W1610054764
BBUZ01000029
Actinomycetota
Streptomyces sp. NBRC 110028 [BBUZ]
212221
212297
+
Pro
GGG
[ENA]
¡û
>C131019807
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
2013849
2013923
+
Pro
GGG
[Ensembl]
¡û
>W1610998071
LXIC01000012
Actinomycetota
Streptomyces sp. RTd22 [LXIC]
175702
175626
-
Pro
GGG
[ENA]
¡û
>W1710017511
ASQP01000319
Actinomycetota
Streptomyces sparsogenes DSM 40356 [ASQP]
18327
18403
+
Pro
GGG
[ENA]
¡û
>W1710051463
BBUZ01000029
Actinomycetota
Streptomyces sp. NBRC 110028 [BBUZ]
212221
212297
+
Pro
GGG
[ENA]
¡û
>W1710515800
FNCC01000012
Actinomycetota
Lentzea fradiae [FNCC]
127002
126928
-
Pro
GGG
[ENA]
¡û
>W1710519509
FNET01000029
Actinomycetota
Lentzea albidocapillata violacea [FNET]
13093
13167
+
Pro
GGG
[ENA]
¡û
>W1710524698
FNIX01000025
Actinomycetota
Lentzea jiangxiensis [FNIX]
65741
65815
+
Pro
GGG
[ENA]
¡û
>W1710550929
FOFR01000010
Actinomycetota
Lentzea xinjiangensis [FOFR]
101849
101923
+
Pro
GGG
[ENA]
¡û
>W1710551045
FOFT01000012
Actinomycetota
Lentzea flaviverrucosa [FOFT]
133006
133080
+
Pro
GGG
[ENA]
¡û
>W1710551156
FOFV01000018
Actinomycetota
Lentzea albida [FOFV]
37083
37009
-
Pro
GGG
[ENA]
¡û
>W1710560244
FONG01000001
Actinomycetota
Actinacidiphila alni [FONG]
416705
416631
-
Pro
GGG
[ENA]
¡û
>W1710565891
FORP01000005
Actinomycetota
Amycolatopsis sacchari [FORP]
139720
139794
+
Pro
GGG
[ENA]
¡û
>W1710574761
FOYL01000015
Actinomycetota
Lentzea waywayandensis [FOYL]
83893
83819
-
Pro
GGG
[ENA]
¡û
>W1710606490
FWXV01000019
Actinomycetota
Kibdelosporangium aridum [FWXV]
64776
64850
+
Pro
GGG
[ENA]
¡û
>W1710606870
FWYC01000023
Actinomycetota
Lentzea albidocapillata [FWYC]
120524
120598
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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