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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270880 (77 seq.)
>W1710921726
LNZX01000021
Alphaproteobacteria
Bartonella henselae [LNZX]
38655
38731
+
Pro
GGG
[ENA]
¡û
>W1710921778
LNZY01000036
Alphaproteobacteria
Bartonella henselae [LNZY]
8595
8519
-
Pro
GGG
[ENA]
¡û
>W1710921807
LNZZ01000016
Alphaproteobacteria
Bartonella henselae [LNZZ]
38630
38706
+
Pro
GGG
[ENA]
¡û
>W1710921834
LOAA01000009
Alphaproteobacteria
Bartonella henselae [LOAA]
37570
37646
+
Pro
GGG
[ENA]
¡û
>W1710921879
LOAB01000011
Alphaproteobacteria
Bartonella henselae [LOAB]
8377
8301
-
Pro
GGG
[ENA]
¡û
>W1710921905
LOAC01000006
Alphaproteobacteria
Bartonella henselae [LOAC]
43760
43836
+
Pro
GGG
[ENA]
¡û
>W1710921953
LOAD01000018
Alphaproteobacteria
Bartonella henselae [LOAD]
8377
8301
-
Pro
GGG
[ENA]
¡û
>W1710922005
LOAE01000034
Alphaproteobacteria
Bartonella henselae [LOAE]
38520
38596
+
Pro
GGG
[ENA]
¡û
>W1710922023
LOAF01000007
Alphaproteobacteria
Bartonella henselae [LOAF]
44241
44317
+
Pro
GGG
[ENA]
¡û
>W1710922069
LOAG01000012
Alphaproteobacteria
Bartonella henselae [LOAG]
41574
41650
+
Pro
GGG
[ENA]
¡û
>W1710922123
LOAH01000052
Alphaproteobacteria
Bartonella henselae [LOAH]
42043
42119
+
Pro
GGG
[ENA]
¡û
>W1710922138
LOAI01000005
Alphaproteobacteria
Bartonella henselae [LOAI]
8411
8335
-
Pro
GGG
[ENA]
¡û
>W1711034304
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
617642
617566
-
Pro
GGG
[ENA]
¡û
>W1711256897
LYSZ01000011
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
2
78
+
Pro
GGG
[ENA]
¡û
>W1711256904
LYSZ01000020
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
90
14
-
Pro
GGG
[ENA]
¡û
>W1711475543
MJUX01000001
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
614604
614680
+
Pro
GGG
[ENA]
¡û
>W1711738595
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
528828
528752
-
Pro
GGG
[ENA]
¡û
>W1711766843
MUYW01000154
Alphaproteobacteria
Bartonella taylorii [MUYW]
1675
1599
-
Pro
GGG
[ENA]
¡û
>W131060593
ANHY01000006
Alphaproteobacteria
Caenispirillum salinarum AK4 [ANHY]
49227
49303
+
Pro
GGG
[ENA]
¡û
>C003039
BX897699
Alphaproteobacteria
Bartonella henselae str. Houston-1 [BX897699]
847213
847137
-
Pro
GGG
[Ensembl]
¡û
>WENV180017696
FSXN01000511
[FSXN] metagenome; soil
620
544
-
Pro
GGG
[ENA]
¢þ
>WENV180018749
FTAI01000751
[FTAI] metagenome; soil
1335
1411
+
Pro
GGG
[ENA]
¢þ
>WENV180022853
FTGV01001125
[FTGV] metagenome; soil
1494
1418
-
Pro
GGG
[ENA]
¢þ
>WENV180023707
FTIE01033339
[FTIE] metagenome; soil
21
97
+
Pro
GGG
[ENA]
¢þ
>WENV180026744
FTIU01072935
[FTIU] metagenome; soil
279
203
-
Pro
GGG
[ENA]
¢þ
>WENV180026792
FTIU01155089
[FTIU] metagenome; soil
452
376
-
Pro
GGG
[ENA]
¢þ
>WENV180028294
FTJA01056760
[FTJA] metagenome; soil
436
360
-
Pro
GGG
[ENA]
¢þ
>WENV180028336
FTJA01105455
[FTJA] metagenome; soil
1301
1225
-
Pro
GGG
[ENA]
¢þ
>WENV180032032
FTJU01014368
[FTJU] metagenome; soil
97
173
+
Pro
GGG
[ENA]
¢þ
>WENV180035477
FTKZ01036296
[FTKZ] metagenome; soil
30
106
+
Pro
GGG
[ENA]
¢þ
>W141006728
AGWA01000006
Alphaproteobacteria
Bartonella bovis Apr-91 [AGWA]
423010
422934
-
Pro
GGG
[ENA]
¡û
>W141006809
AGWC01000004
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
420417
420341
-
Pro
GGG
[ENA]
¡û
>W141006854
AGWD01000013
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
8842
8766
-
Pro
GGG
[ENA]
¡û
>W141009953
AHPI01000048
Alphaproteobacteria
Bartonella henselae JK 53 [AHPI]
10817
10741
-
Pro
GGG
[ENA]
¡û
>W141010000
AHPJ01000047
Alphaproteobacteria
Bartonella henselae str. Zeus [AHPJ]
9316
9240
-
Pro
GGG
[ENA]
¡û
>W141010063
AHPL01000008
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
12466
12390
-
Pro
GGG
[ENA]
¡û
>WENV181227761
OFDN01040560
[OFDN] hot springs metagenome; Water
987
911
-
Pro
GGG
[ENA]
¢þ
>W141222477
AZZR01000005
Alphaproteobacteria
Bartonella henselae JK 51 [AZZR]
8348
8272
-
Pro
GGG
[ENA]
¡û
>W141222503
AZZS01000007
Alphaproteobacteria
Bartonella henselae JK 50 [AZZS]
8440
8364
-
Pro
GGG
[ENA]
¡û
>W141222527
AZZT01000005
Alphaproteobacteria
Bartonella henselae JK 42 [AZZT]
10052
9976
-
Pro
GGG
[ENA]
¡û
>W141222599
AZZU01000022
Alphaproteobacteria
Bartonella henselae JK 41 [AZZU]
12615
12539
-
Pro
GGG
[ENA]
¡û
>W141245846
CALU01000007
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
24779
24855
+
Pro
GGG
[ENA]
¡û
>WENV182543991
OJBD01007513
[OJBD] seawater metagenome; Sea water
721
645
-
Pro
GGG
[ENA]
¢þ
>W141275440
JACY01000010
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
432
356
-
Pro
GGG
[ENA]
¡û
>C08007889
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
1862472
1862548
+
Pro
GGG
[Ensembl]
¡û
>WENV170111995
CEGC01000442
[CEGC] microbial mat metagenome; grass silage
5872
5948
+
Pro
GGG
[ENA]
¢þ
>WENV170112115
CEGD01000770
[CEGD] microbial mat metagenome; grass silage
6203
6127
-
Pro
GGG
[ENA]
¢þ
>WENV170835994
MDSZ01123235
[MDSZ] marine metagenome; seawater
1514
1590
+
Pro
GGG
[ENA]
¢þ
>WENV170848044
MDTA01072102
[MDTA] marine metagenome; seawater
17540
17616
+
Pro
GGG
[ENA]
¢þ
>C181046398
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
835760
835684
-
Pro
GGG
-
¡û
>C181097347
CP024201
Alphaproteobacteria
Caulobacter mirabilis FWC 38 [CP024201]
2103845
2103921
+
Pro
GGG
-
¡û
>C181179022
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
1300610
1300686
+
Pro
GGG
-
¡û
>C191081605
CP031841
Alphaproteobacteria
Breoghania sp. L-A4 [CP031841]
3125971
3126047
+
Pro
GGG
-
¡û
>W1910743267
MHXO01000153
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
19460
19384
-
Pro
GGG
[ENA]
¡û
>W1910828845
MWVG01000003
Alphaproteobacteria
Bartonella bovis BbUM [MWVG]
93677
93753
+
Pro
GGG
[ENA]
¡û
>W1810158065
PJCH01000015
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
226793
226717
-
Pro
GGG
[ENA]
¡û
>W1810487008
QAYG01000004
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
364267
364343
+
Pro
GGG
[ENA]
¡û
>W1810489518
QBBV01000004
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
412202
412278
+
Pro
GGG
[ENA]
¡û
>W1810489530
QBBW01000001
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
617793
617869
+
Pro
GGG
[ENA]
¡û
>W1810624953
QHHQ01000005
Alphaproteobacteria
Acuticoccus sediminis PTG4-2 [QHHQ]
487777
487853
+
Pro
GGG
[ENA]
¡û
>C151101990
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
841413
841337
-
Pro
GGG
[Ensembl]
¡û
>C151102031
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
920160
920084
-
Pro
GGG
[Ensembl]
¡û
>C151102033
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
817840
817764
-
Pro
GGG
[Ensembl]
¡û
>C151105191
LN879429
Alphaproteobacteria
Bartonella henselae MVT02 [LN879429]
841413
841337
-
Pro
GGG
-
¡û
>C161073370
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
1828651
1828575
-
Pro
GGG
[Ensembl]
¡û
>W121059102
AILU01000004
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
591
515
-
Pro
GGG
[ENA]
¡û
>W121059220
AILX01000005
Alphaproteobacteria
Bartonella washoeensis 085-0475 [AILX]
371338
371262
-
Pro
GGG
[ENA]
¡û
>W121059321
AILZ01000024
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
99483
99559
+
Pro
GGG
[ENA]
¡û
>W121059366
AIMA01000014
Alphaproteobacteria
Bartonella melophagi K-2C [AIMA]
222022
221946
-
Pro
GGG
[ENA]
¡û
>W121059464
AIMD01000023
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
58749
58825
+
Pro
GGG
[ENA]
¡û
>W121059659
AIMH01000038
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
58923
58847
-
Pro
GGG
[ENA]
¡û
>C131002106
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
990040
990116
+
Pro
GGG
[Ensembl]
¡û
>W1610882079
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
617642
617566
-
Pro
GGG
[ENA]
¡û
>W1611019922
LYSZ01000011
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
2
78
+
Pro
GGG
[ENA]
¡û
>W1611019929
LYSZ01000020
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
90
14
-
Pro
GGG
[ENA]
¡û
>W1710015722
AQRB01000011
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
81989
82065
+
Pro
GGG
[ENA]
¡û
>W1710598477
FTOA01000001
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
551995
552071
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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