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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270929 (52 seq.)
>W1711625350
MPIO01000025
Gammaproteobacteria
Atopomonas hussainii [MPIO]
3613
3537
-
Ile
GAT
[ENA]
¡û
>WENV180096643
MTBK01140723
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
105
29
-
Ile
GAT
[ENA]
¢þ
>WENV170012492
ASRK01007291
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV170012576
ASRL01003705
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
246
322
+
Ile
GAT
[ENA]
¢þ
>WENV170012797
ASRO01002651
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
813
889
+
Ile
GAT
[ENA]
¢þ
>WENV170014489
AYRG01002634
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
813
889
+
Ile
GAT
[ENA]
¢þ
>WENV170635453
JDSF01025794
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
227
151
-
Ile
GAT
[ENA]
¢þ
>WENV170646441
JQGR01004464
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
480
556
+
Ile
GAT
[ENA]
¢þ
>WENV170685929
LFRM01116352
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1844
1768
-
Ile
GAT
[ENA]
¢þ
>WENV170689308
LFRM01288383
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
90
166
+
Ile
GAT
[ENA]
¢þ
>WENV170690157
LFRM01327619
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
445
521
+
Ile
GAT
[ENA]
¢þ
>WENV170704253
LLEJ01000628
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
883
959
+
Ile
GAT
[ENA]
¢þ
>WENV170704655
LLEL01023449
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2
78
+
Ile
GAT
[ENA]
¢þ
>WENV170704729
LLEM01001052
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
197
121
-
Ile
GAT
[ENA]
¢þ
>WENV170719453
LSQX01115316
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1120
1044
-
Ile
GAT
[ENA]
¢þ
>C151093907
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
410899
410975
+
Ile
GAT
-
¡û
>C151093920
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2045103
2045179
+
Ile
GAT
-
¡û
>C151093928
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2482521
2482597
+
Ile
GAT
-
¡û
>C151093933
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1817460
1817384
-
Ile
GAT
-
¡û
>C151093943
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1123138
1123062
-
Ile
GAT
-
¡û
>C151093960
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
390476
390552
+
Ile
GAT
-
¡û
>C151093987
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1422010
1421934
-
Ile
GAT
-
¡û
>C151093995
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1034749
1034673
-
Ile
GAT
-
¡û
>C151094012
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
839349
839425
+
Ile
GAT
-
¡û
>C151094020
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1239076
1239152
+
Ile
GAT
-
¡û
>C151094026
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1641445
1641521
+
Ile
GAT
-
¡û
>C151094050
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
629291
629215
-
Ile
GAT
-
¡û
>C151094061
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
8329
8253
-
Ile
GAT
-
¡û
>C151094064
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
23774
23850
+
Ile
GAT
-
¡û
>C151094077
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1284771
1284847
+
Ile
GAT
-
¡û
>C151094087
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1951599
1951675
+
Ile
GAT
-
¡û
>C151094100
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
673122
673046
-
Ile
GAT
-
¡û
>C151094125
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1888895
1888971
+
Ile
GAT
-
¡û
>C151094136
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1672318
1672242
-
Ile
GAT
-
¡û
>C151094146
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1078985
1078909
-
Ile
GAT
-
¡û
>C151094153
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
646989
646913
-
Ile
GAT
-
¡û
>C151094163
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
24158
24234
+
Ile
GAT
-
¡û
>C151094183
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2017298
2017374
+
Ile
GAT
-
¡û
>C151094194
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1185492
1185416
-
Ile
GAT
-
¡û
>C151094202
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
776026
775950
-
Ile
GAT
-
¡û
>C151094215
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
23784
23860
+
Ile
GAT
-
¡û
>C151094226
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1334545
1334621
+
Ile
GAT
-
¡û
>C151094236
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1985488
1985564
+
Ile
GAT
-
¡û
>C151094247
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1104287
1104211
-
Ile
GAT
-
¡û
>C151094255
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
676537
676461
-
Ile
GAT
-
¡û
>C161041348
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
24595
24671
+
Ile
GAT
[Ensembl]
¡û
>C161041361
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1567017
1567093
+
Ile
GAT
[Ensembl]
¡û
>C161041369
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1972720
1972796
+
Ile
GAT
[Ensembl]
¡û
>C161041379
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1337701
1337625
-
Ile
GAT
[Ensembl]
¡û
>C161041389
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
702786
702710
-
Ile
GAT
[Ensembl]
¡û
>W1710544314
FOAS01000032
Gammaproteobacteria
Atopomonas hussainii [FOAS]
147
223
+
Ile
GAT
[ENA]
¡û
>W1710544316
FOAS01000045
Gammaproteobacteria
Atopomonas hussainii [FOAS]
3613
3537
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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