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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270933 (12 seq.)
>WENV170685143
LFRM01074920
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4441
4517
+
Val
GAC
[ENA]
¢þ
>W1910635759
LNJZ01000009
Gammaproteobacteria
Thiopseudomonas denitrificans X2 [LNJZ]
202554
202630
+
Val
GAC
[ENA]
¡û
>C151093914
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
850763
850839
+
Val
GAC
-
¡û
>C151093967
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
772476
772552
+
Val
GAC
-
¡û
>C151094033
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
2061502
2061578
+
Val
GAC
-
¡û
>C151094071
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
411858
411934
+
Val
GAC
-
¡û
>C151094160
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
262295
262219
-
Val
GAC
-
¡û
>C151094169
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
512885
512961
+
Val
GAC
-
¡û
>C151094220
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
405640
405716
+
Val
GAC
-
¡û
>C161041355
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
444653
444729
+
Val
GAC
[Ensembl]
¡û
>W1610607231
LFTS01000063
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
4441
4517
+
Val
GAC
[ENA]
¡û
>W1710728518
LFTS01000063
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
4441
4517
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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