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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270969 (23 seq.)
>C171046541
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
14025954
14026028
+
Ile
GAT
-
¡û
>WENV180024360
FTIG01266692
[FTIG] metagenome; soil
658
583
-
Ile
GAT
[ENA]
¢þ
>WENV180027712
FTIZ01038827
[FTIZ] metagenome; soil
710
634
-
Ile
GAT
[ENA]
¢þ
>WENV180029272
FTJI01358863
[FTJI] metagenome; soil
123
197
+
Ile
GAT
[ENA]
¢þ
>WENV180034803
FTKR01385236
[FTKR] metagenome; soil
123
197
+
Ile
GAT
[ENA]
¢þ
>WENV180292679
OBIV01568050
[OBIV] soil metagenome; Clay
344
270
-
Ile
GAT
[ENA]
¢þ
>WENV180355607
OBNI01006835
[OBNI] sediment metagenome; sediment
450
376
-
Ile
GAT
[ENA]
¢þ
>WENV180356045
OBNJ01020866
[OBNJ] sediment metagenome; sediment
46
120
+
Ile
GAT
[ENA]
¢þ
>W141073091
ASRX01000014
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
231878
231954
+
Ile
GAT
[ENA]
¡û
>C08008916
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
3487677
3487753
+
Ile
GAT
[Ensembl]
¡û
>C08008931
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
10340151
10340075
-
Ile
GAT
[Ensembl]
¡û
>C181012485
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
3903980
3904055
+
Ile
GAT
-
¡û
>C181012500
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
11954124
11954050
-
Ile
GAT
-
¡û
>C191010015
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
2993616
2993691
+
Ile
GAT
-
¡û
>C191010028
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
8623477
8623403
-
Ile
GAT
-
¡û
>C191010066
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
4327453
4327528
+
Ile
GAT
-
¡û
>C191010081
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
11965975
11965900
-
Ile
GAT
-
¡û
>C151091956
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
1429135
1429211
+
Ile
GAT
-
¡û
>C151091984
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
8290482
8290406
-
Ile
GAT
-
¡û
>C151092011
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
7490707
7490631
-
Ile
GAT
-
¡û
>ENV09000060
ABSN01002958
Freshwater sediment metagenome lwFormaldehyde_C1
289
365
+
Ile
GAT
[ENA]
¡û
>C131010750
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
4324648
4324724
+
Ile
GAT
[Ensembl]
¡û
>C131010767
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
12129565
12129489
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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