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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271017 (95 seq.)
>W1710776314
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
54554
54628
+
Phe
GAA
[ENA]
¡û
>W1711343469
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
3923425
3923501
+
Phe
GAA
[ENA]
¡û
>W1711343521
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
3926490
3926566
+
Phe
GAA
[ENA]
¡û
>W1711343597
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1545277
1545201
-
Phe
GAA
[ENA]
¡û
>W1711343621
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2693419
2693493
+
Phe
GAA
[ENA]
¡û
>W1711343691
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
5563973
5564049
+
Phe
GAA
[ENA]
¡û
>W1711343768
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3381778
3381704
-
Phe
GAA
[ENA]
¡û
>W1711343785
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2072851
2072925
+
Phe
GAA
[ENA]
¡û
>W1711343876
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3385116
3385042
-
Phe
GAA
[ENA]
¡û
>W1711343891
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
501474
501550
+
Phe
GAA
[ENA]
¡û
>W1711343939
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
191324
191398
+
Phe
GAA
[ENA]
¡û
>W1711386168
MEEZ01000194
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
15385
15311
-
Phe
GAA
[ENA]
¡û
>W1711386194
MEFA01000070
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
210
284
+
Phe
GAA
[ENA]
¡û
>W1711387145
MEGH01000057
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
37587
37661
+
Phe
GAA
[ENA]
¡û
>W1711427803
MIFY01000024
Actinomycetota
Pseudonocardia autotrophica [MIFY]
94266
94192
-
Phe
GAA
[ENA]
¡û
>W1711427984
MIGB01000053
Actinomycetota
Pseudonocardia autotrophica [MIGB]
8244
8170
-
Phe
GAA
[ENA]
¡û
>W1711575780
MNJM01000094
Actinomycetota
Actinobacteria bacterium 13_1_20CM_3_71_11 [MNJM]
9966
9890
-
Phe
GAA
[ENA]
¡û
>W1711575804
MNJM01000340
Actinomycetota
Actinobacteria bacterium 13_1_20CM_3_71_11 [MNJM]
2371
2295
-
Phe
GAA
[ENA]
¡û
>W1711724903
MTQO01000053
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
644319
644393
+
Phe
GAA
[ENA]
¡û
>W131011150
AICY01000085
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
518
592
+
Phe
GAA
[ENA]
¡û
>W131054886
ANBB01000064
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
7948
8024
+
Phe
GAA
[ENA]
¡û
>W131055152
ANBG01000239
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
466
392
-
Phe
GAA
[ENA]
¡û
>W131163096
AQZN01000002
Actinomycetota
Actinopolyspora mortivallis DSM 44261 [AQZN]
29948
30022
+
Phe
GAA
[ENA]
¡û
>W131231270
AUII01000015
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
92807
92733
-
Phe
GAA
[ENA]
¡û
>C021626
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
7840580
7840504
-
Phe
GAA
[Ensembl]
¡û
>W141094392
AVCN01000027
Actinomycetota
Saccharopolyspora erythraea D [AVCN]
55990
56066
+
Phe
GAA
[ENA]
¡û
>WENV181292191
OFHD01052730
[OFHD] soil metagenome; Clay
77
1
-
Phe
GAA
[ENA]
¢þ
>WENV181609185
OGLN01010661
[OGLN] metagenome; Human gut stool
3153
3228
+
Phe
GAA
[ENA]
¢þ
>WENV181641952
OGNF01038219
[OGNF] metagenome; Human gut stool
637
712
+
Phe
GAA
[ENA]
¢þ
>W141185565
AYJW01000001
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
141665
141589
-
Phe
GAA
[ENA]
¡û
>W141201004
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
5890242
5890316
+
Phe
GAA
[ENA]
¡û
>WENV170023790
BCQL01003622
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1411
1335
-
Phe
GAA
[ENA]
¢þ
>W141452139
JFBT01000005
Actinomycetota
Cryptosporangium arvum DSM 44712 [JFBT]
2879768
2879844
+
Phe
GAA
[ENA]
¡û
>C181072160
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
4810027
4809953
-
Phe
GAA
-
¡û
>C181072215
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
6124027
6123953
-
Phe
GAA
-
¡û
>C191005722
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
688371
688445
+
Phe
GAA
-
¡û
>W141754579
JNVU01000030
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
29737
29813
+
Phe
GAA
[ENA]
¡û
>W141757792
JNYD01000029
Actinomycetota
Pseudonocardia autotrophica [JNYD]
32328
32254
-
Phe
GAA
[ENA]
¡û
>W141758272
JNYM01001205
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
2665
2591
-
Phe
GAA
[ENA]
¡û
>W141758814
JNYW01001722
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
132
58
-
Phe
GAA
[ENA]
¡û
>W141760440
JOAA01000019
Actinomycetota
Rhodococcus rhodnii [JOAA]
229665
229591
-
Phe
GAA
[ENA]
¡û
>W1910038445
BEGX01000128
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
272739
272664
-
Phe
GAA
[ENA]
¡û
>W1910179053
BJFL01000003
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
371408
371331
-
Phe
GAA
[ENA]
¡û
>W1910182963
BJNH01000118
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
8824
8898
+
Phe
GAA
[ENA]
¡û
>W1910575984
JRUV01000275
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
5301
5227
-
Phe
GAA
[ENA]
¡û
>W1911572298
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
7978
7902
-
Phe
GAA
[ENA]
¡û
>W1911679498
QHKI01000017
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
121803
121877
+
Phe
GAA
[ENA]
¡û
>W1810121465
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
3856414
3856488
+
Phe
GAA
[ENA]
¡û
>W1810173485
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
572963
572888
-
Phe
GAA
[ENA]
¡û
>W1810176384
PJPW02000019
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
2236
2310
+
Phe
GAA
[ENA]
¡û
>W1810363915
PVSR01000082
Actinomycetota
Actinopolyspora mortivallis M5A [PVSR]
600
674
+
Phe
GAA
[ENA]
¡û
>W1810504361
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
7376274
7376198
-
Phe
GAA
[ENA]
¡û
>W1810758988
QPJC01000001
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
310081
310006
-
Phe
GAA
[ENA]
¡û
>C151075008
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
5103160
5103084
-
Phe
GAA
-
¡û
>C151087148
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4077930
4078004
+
Phe
GAA
-
¡û
>C151087204
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4839297
4839223
-
Phe
GAA
-
¡û
>W10100222
ABFV01000026
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
55557
55633
+
Phe
GAA
[ENA]
¡û
>W1510073599
CDME01000001
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
582
506
-
Phe
GAA
[ENA]
¡û
>W10118427
ADUJ01000853
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2302
2226
-
Phe
GAA
[ENA]
¡û
>W10128100
AEGE01000215
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
6949
7023
+
Phe
GAA
[ENA]
¡û
>WENV11100187
ADWX01329114
Ant fungus garden metagenome, Atta colombica fungus garden
181
255
+
Phe
GAA
[ENA]
¡û
>W11100222
ABFV01000026
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
55557
55633
+
Phe
GAA
[ENA]
¡û
>C11117068
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
619140
619214
+
Phe
GAA
[Ensembl]
¡û
>W1511307028
JPMV01000010
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
55889
55963
+
Phe
GAA
[ENA]
¡û
>W11123502
ADUJ01000853
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2302
2226
-
Phe
GAA
[ENA]
¡û
>W11136812
AEGE01000215
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
6949
7023
+
Phe
GAA
[ENA]
¡û
>W11152486
AEYC01000068
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
29750
29826
+
Phe
GAA
[ENA]
¡û
>C161040367
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
594240
594164
-
Phe
GAA
-
¡û
>C161040415
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2299217
2299141
-
Phe
GAA
[Ensembl]
¡û
>C161045527
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
11367742
11367666
-
Phe
GAA
[Ensembl]
¡û
>C161061316
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
1703767
1703691
-
Phe
GAA
[Ensembl]
¡û
>W1610551413
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
624053
624127
+
Phe
GAA
[ENA]
¡û
>W1610551466
JYIK01001092
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3099
3173
+
Phe
GAA
[ENA]
¡û
>W1610578272
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
180051
179977
-
Phe
GAA
[ENA]
¡û
>W1610612186
LGEM01000103
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
40866
40940
+
Phe
GAA
[ENA]
¡û
>W1610640420
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
54554
54628
+
Phe
GAA
[ENA]
¡û
>W1710514726
FNBE01000009
Actinomycetota
Pseudonocardia oroxyli [FNBE]
40963
41037
+
Phe
GAA
[ENA]
¡û
>W1710520271
FNFM01000002
Actinomycetota
Actinopolyspora mzabensis [FNFM]
284800
284726
-
Phe
GAA
[ENA]
¡û
>W1710525626
FNJR01000009
Actinomycetota
Actinopolyspora xinjiangensis [FNJR]
8168
8094
-
Phe
GAA
[ENA]
¡û
>W1710529993
FNOK01000025
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
36051
36127
+
Phe
GAA
[ENA]
¡û
>W1710539109
FNVB01000008
Actinomycetota
Saccharopolyspora kobensis hirsuta [FNVB]
156699
156623
-
Phe
GAA
[ENA]
¡û
>W1710558820
FOME01000007
Actinomycetota
Saccharopolyspora kobensis jiangxiensis [FOME]
156704
156628
-
Phe
GAA
[ENA]
¡û
>W1710559906
FOMZ01000005
Actinomycetota
Actinopolyspora alba [FOMZ]
293659
293585
-
Phe
GAA
[ENA]
¡û
>W1710569646
FOUP01000001
Actinomycetota
Saccharopolyspora antimicrobica [FOUP]
40676
40752
+
Phe
GAA
[ENA]
¡û
>W1710570170
FOUY01000044
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
43266
43342
+
Phe
GAA
[ENA]
¡û
>W1710576262
FOZX01000001
Actinomycetota
Saccharopolyspora flava [FOZX]
1427242
1427166
-
Phe
GAA
[ENA]
¡û
>W1710577329
FPAT01000004
Actinomycetota
Actinopolyspora righensis [FPAT]
271054
270980
-
Phe
GAA
[ENA]
¡û
>W1710584414
FQVN01000001
Actinomycetota
Streptoalloteichus hindustanus [FQVN]
288362
288286
-
Phe
GAA
[ENA]
¡û
>W1710592797
FRCS01000010
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
277260
277186
-
Phe
GAA
[ENA]
¡û
>W1710600704
FUWS01000006
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
59437
59361
-
Phe
GAA
[ENA]
¡û
>W1710606463
FWXV01000002
Actinomycetota
Kibdelosporangium aridum [FWXV]
969941
969867
-
Phe
GAA
[ENA]
¡û
>W1710661686
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
624053
624127
+
Phe
GAA
[ENA]
¡û
>W1710661739
JYIK01001092
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3099
3173
+
Phe
GAA
[ENA]
¡û
>W1710697145
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
180051
179977
-
Phe
GAA
[ENA]
¡û
>W1710733692
LGEM01000103
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
40866
40940
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK