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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271045 (101 seq.)
>W1711066599
LSCZ01000014
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
1331
1257
-
Pro
GGG
[ENA]
¡û
>W1711080549
LSRB01000057
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
530
456
-
Pro
GGG
[ENA]
¡û
>W1711096385
LTHS01000005
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
228
154
-
Pro
GGG
[ENA]
¡û
>W1711099122
LTKF01000009
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
1329
1255
-
Pro
GGG
[ENA]
¡û
>W1711108518
LTTU01000102
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
1327
1253
-
Pro
GGG
[ENA]
¡û
>W1711109382
LTUP01000060
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
1325
1251
-
Pro
GGG
[ENA]
¡û
>W1711507535
MKXT01000013
Actinomycetota
Corynebacterium sp. S5S1 [MKXT]
2656
2580
-
Pro
GGG
[ENA]
¡û
>W1712077677
NGUZ01000001
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
579332
579408
+
Pro
GGG
[ENA]
¡û
>WENV180119401
OASD01067132
[OASD] human gut metagenome; ENVO:feces
123
49
-
Pro
GGG
[ENA]
¢þ
>WENV180228527
OBCD01000064
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
46916
46990
+
Pro
GGG
[ENA]
¢þ
>WENV180312977
OBJZ01011247
[OBJZ] human gut metagenome; fecal sample
227
153
-
Pro
GGG
[ENA]
¢þ
>WENV180554405
OCJN01000342
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
5496
5570
+
Pro
GGG
[ENA]
¢þ
>WENV180557052
OCJU01006581
[OCJU] human gut metagenome; Infant 2 DOL 12 skin
80
154
+
Pro
GGG
[ENA]
¢þ
>WENV180711716
ODFQ01003855
[ODFQ] human metagenome; G_DNA_Anterior nares
282
208
-
Pro
GGG
[ENA]
¢þ
>WENV180766224
ODIE01000065
[ODIE] human metagenome; G_DNA_Anterior nares
17272
17346
+
Pro
GGG
[ENA]
¢þ
>WENV180836545
ODKF01000690
[ODKF] human metagenome; G_DNA_Anterior nares
1954
2028
+
Pro
GGG
[ENA]
¢þ
>WENV180844788
ODKO01005736
[ODKO] human metagenome; G_DNA_Anterior nares
370
296
-
Pro
GGG
[ENA]
¢þ
>WENV180878914
ODLY01001770
[ODLY] human metagenome; G_DNA_Anterior nares
193
119
-
Pro
GGG
[ENA]
¢þ
>WENV180913451
ODSU01002242
[ODSU] human metagenome; G_DNA_Anterior nares
1521
1595
+
Pro
GGG
[ENA]
¢þ
>WENV180914504
ODSX01003194
[ODSX] human metagenome; G_DNA_Anterior nares
149
75
-
Pro
GGG
[ENA]
¢þ
>WENV180916314
ODTC01003432
[ODTC] human metagenome; G_DNA_Anterior nares
134
60
-
Pro
GGG
[ENA]
¢þ
>WENV180917897
ODTE01003635
[ODTE] human metagenome; G_DNA_Anterior nares
632
706
+
Pro
GGG
[ENA]
¢þ
>WENV180918040
ODTF01000030
[ODTF] human metagenome; G_DNA_Anterior nares
26448
26522
+
Pro
GGG
[ENA]
¢þ
>WENV180966782
ODUR01008788
[ODUR] human metagenome; G_DNA_Anterior nares
327
401
+
Pro
GGG
[ENA]
¢þ
>WENV180967043
ODUS01008868
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
128
54
-
Pro
GGG
[ENA]
¢þ
>WENV180972508
ODUV01004029
[ODUV] human metagenome; G_DNA_Anterior nares
397
471
+
Pro
GGG
[ENA]
¢þ
>WENV180989594
ODVM01004844
[ODVM] human metagenome; G_DNA_Anterior nares
311
237
-
Pro
GGG
[ENA]
¢þ
>WENV181000366
ODVU01016154
[ODVU] human metagenome; G_DNA_Anterior nares
107
33
-
Pro
GGG
[ENA]
¢þ
>WENV181010035
ODWG01000043
[ODWG] human metagenome; G_DNA_Anterior nares
1856
1782
-
Pro
GGG
[ENA]
¢þ
>WENV181025101
ODWY01008508
[ODWY] human metagenome; G_DNA_Anterior nares
102
28
-
Pro
GGG
[ENA]
¢þ
>WENV181040314
ODXR01000004
[ODXR] human metagenome; G_DNA_Anterior nares
193
119
-
Pro
GGG
[ENA]
¢þ
>WENV181131395
OEGC01000024
[OEGC] human metagenome; G_DNA_Anterior nares
30747
30673
-
Pro
GGG
[ENA]
¢þ
>WENV181131713
OEGD01007469
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
361
435
+
Pro
GGG
[ENA]
¢þ
>WENV181212232
OFBN01000469
[OFBN] metagenome; hydrothermal vent
615
541
-
Pro
GGG
[ENA]
¢þ
>WENV181212269
OFBO01000005
[OFBO] metagenome; hydrothermal vent
7589
7663
+
Pro
GGG
[ENA]
¢þ
>WENV181212362
OFBP01000088
[OFBP] metagenome; hydrothermal vent
773
699
-
Pro
GGG
[ENA]
¢þ
>WENV181212425
OFBQ01000019
[OFBQ] metagenome; hydrothermal vent
7589
7663
+
Pro
GGG
[ENA]
¢þ
>WENV181212503
OFBR01000005
[OFBR] metagenome; hydrothermal vent
7589
7663
+
Pro
GGG
[ENA]
¢þ
>WENV181212640
OFBS01001439
[OFBS] metagenome; hydrothermal vent
615
541
-
Pro
GGG
[ENA]
¢þ
>WENV181212692
OFBT01000170
[OFBT] metagenome; hydrothermal vent
5086
5160
+
Pro
GGG
[ENA]
¢þ
>W141154882
AXLN01000007
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
212971
213047
+
Pro
GGG
[ENA]
¡û
>W141154935
AXLO01000004
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
34641
34565
-
Pro
GGG
[ENA]
¡û
>W141154995
AXLP01000003
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
36716
36640
-
Pro
GGG
[ENA]
¡û
>W141155139
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
31369
31293
-
Pro
GGG
[ENA]
¡û
>W141155184
AXLT01000006
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
472603
472679
+
Pro
GGG
[ENA]
¡û
>W141155204
AXLU01000001
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
30459
30383
-
Pro
GGG
[ENA]
¡û
>W141155284
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
472507
472583
+
Pro
GGG
[ENA]
¡û
>W141155336
AXLW01000007
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
31930
31854
-
Pro
GGG
[ENA]
¡û
>W141155363
AXLX01000007
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
259727
259803
+
Pro
GGG
[ENA]
¡û
>W141155421
AXLY01000005
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
29596
29520
-
Pro
GGG
[ENA]
¡û
>W141155455
AXLZ01000001
Actinomycetota
Corynebacterium sp. KPL1821 [AXLZ]
34233
34157
-
Pro
GGG
[ENA]
¡û
>W141155537
AXMA01000008
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
515979
516055
+
Pro
GGG
[ENA]
¡û
>W141155565
AXMB01000002
Actinomycetota
Corynebacterium sp. KPL1817 [AXMB]
472602
472678
+
Pro
GGG
[ENA]
¡û
>W141155616
AXMC01000004
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
257936
258012
+
Pro
GGG
[ENA]
¡û
>WENV181815257
OGTJ01000693
[OGTJ] human gut metagenome; fecal sample 1 from infant 9
866
940
+
Pro
GGG
[ENA]
¢þ
>W141243568
CAJP01000033
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
61888
61962
+
Pro
GGG
[ENA]
¡û
>WENV182629069
OJKR01002899
[OJKR] metagenome; surface
395
469
+
Pro
GGG
[ENA]
¢þ
>WENV182629312
OJKS01000053
[OJKS] metagenome; surface
31964
31890
-
Pro
GGG
[ENA]
¢þ
>WENV182629595
OJKT01002918
[OJKT] metagenome; surface
189
115
-
Pro
GGG
[ENA]
¢þ
>WENV182629720
OJKU01001162
[OJKU] metagenome; surface
623
697
+
Pro
GGG
[ENA]
¢þ
>WENV182629855
OJKV01000103
[OJKV] metagenome; surface
6254
6328
+
Pro
GGG
[ENA]
¢þ
>WENV182640782
OJLD01001742
[OJLD] metagenome; surface
548
474
-
Pro
GGG
[ENA]
¢þ
>WENV182640810
OJLE01000008
[OJLE] metagenome; surface
190205
190279
+
Pro
GGG
[ENA]
¢þ
>WENV182641949
OJLL01000070
[OJLL] metagenome; surface
31870
31796
-
Pro
GGG
[ENA]
¢þ
>WENV182642745
OJLP01000104
[OJLP] metagenome; surface
8356
8282
-
Pro
GGG
[ENA]
¢þ
>WENV182642969
OJLS01000013
[OJLS] metagenome; surface
21091
21017
-
Pro
GGG
[ENA]
¢þ
>WENV182645021
OJLY01001600
[OJLY] metagenome; surface
4734
4660
-
Pro
GGG
[ENA]
¢þ
>WENV182646293
OJMA01001009
[OJMA] metagenome; surface
4098
4172
+
Pro
GGG
[ENA]
¢þ
>WENV182803951
OJUR01000737
[OJUR] human gut metagenome; human gut
1412
1486
+
Pro
GGG
[ENA]
¢þ
>WENV182811977
OJXO01000040
[OJXO] human gut metagenome; human gut
6370
6296
-
Pro
GGG
[ENA]
¢þ
>WENV182812179
OJXQ01001540
[OJXQ] human gut metagenome; human gut
1170
1244
+
Pro
GGG
[ENA]
¢þ
>WENV182829118
OKDM01000081
[OKDM] human gut metagenome; human gut
6370
6296
-
Pro
GGG
[ENA]
¢þ
>WENV182830983
OKEC01000782
[OKEC] human gut metagenome; human gut
3046
2972
-
Pro
GGG
[ENA]
¢þ
>WENV182833925
OKEX01000015
[OKEX] human gut metagenome; human gut
5905
5831
-
Pro
GGG
[ENA]
¢þ
>WENV182834028
OKEY01000397
[OKEY] human gut metagenome; human gut
705
779
+
Pro
GGG
[ENA]
¢þ
>WENV183090771
OLKE01002249
[OLKE] metagenome; surface
1428
1354
-
Pro
GGG
[ENA]
¢þ
>C181143908
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1123507
1123433
-
Pro
GGG
-
¡û
>C181211285
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
1491910
1491836
-
Pro
GGG
-
¡û
>C181215127
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
1960501
1960427
-
Pro
GGG
-
¡û
>C191210974
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1197923
1197849
-
Pro
GGG
-
¡û
>W09113467
ABYQ01000259
Actinomycetota
Corynebacterium pseudogenitalium ATCC 33035 [ABYQ]
59802
59878
+
Pro
GGG
[ENA]
¡û
>W09122419
ACGD01000045
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
163276
163352
+
Pro
GGG
[ENA]
¡û
>W09124059
ACHJ01000123
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
51923
51999
+
Pro
GGG
[ENA]
¡û
>W09135443
ACVP01000032
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
31645
31569
-
Pro
GGG
[ENA]
¡û
>W1911551182
OVSI01000001
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
273596
273670
+
Pro
GGG
[ENA]
¡û
>W1810058130
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
1963336
1963410
+
Pro
GGG
[ENA]
¡û
>W1810568882
QEEY01000002
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
17925
17851
-
Pro
GGG
[ENA]
¡û
>C151084518
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
1113861
1113787
-
Pro
GGG
[Ensembl]
¡û
>W10127202
AEED01000102
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
29829
29753
-
Pro
GGG
[ENA]
¡û
>W1511439794
JUOH01000065
Actinomycetota
Corynebacterium aurimucosum 911_CAUR [JUOH]
31578
31502
-
Pro
GGG
[ENA]
¡û
>W1511448437
JUZU01000065
Actinomycetota
Corynebacterium aurimucosum 620_CAUR [JUZU]
31578
31502
-
Pro
GGG
[ENA]
¡û
>W1511471084
JVXO01000028
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
193843
193919
+
Pro
GGG
[ENA]
¡û
>W1511472673
JVZP01000110
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
193470
193546
+
Pro
GGG
[ENA]
¡û
>W1511473127
JWAB01001442
Actinomycetota
Corynebacterium aurimucosum 118_CAUR [JWAB]
31654
31578
-
Pro
GGG
[ENA]
¡û
>W11134690
AEED01000102
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
29829
29753
-
Pro
GGG
[ENA]
¡û
>W1511644900
LDYE01000011
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
329725
329799
+
Pro
GGG
[ENA]
¡û
>W1610507483
FLTI01000034
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
276629
276555
-
Pro
GGG
[ENA]
¡û
>W1610907169
LSCZ01000014
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
1331
1257
-
Pro
GGG
[ENA]
¡û
>W1610919416
LSRB01000057
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
530
456
-
Pro
GGG
[ENA]
¡û
>ENV005336
EU060410
Environmental sample from ENV division of INSDC
487
411
-
Pro
GGG
[ENA]
>W1710499701
FLTI01000034
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
276629
276555
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK