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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271061 (48 seq.)
>W131063383
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1874360
1874285
-
Pro
GGG
[ENA]
¡û
>W131087162
AOCI01000048
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
7056
6981
-
Pro
GGG
[ENA]
¡û
>W131203780
ASZQ01000257
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
26103
26178
+
Pro
GGG
[ENA]
¡û
>W1711377898
MDZH01000166
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
36512
36587
+
Pro
GGG
[ENA]
¡û
>W1711603044
MOLN01000193
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
5253
5178
-
Pro
GGG
[ENA]
¡û
>W1711662026
MQTZ01000002
Cyanobacteriota
Leptolyngbya sp. 'hensonii' 'hensonii' [MQTZ]
38949
38874
-
Pro
GGG
[ENA]
¡û
>W1711772020
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
755202
755277
+
Pro
GGG
[ENA]
¡û
>C171016652
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2250896
2250821
-
Pro
GGG
-
¡û
>C171112066
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3397562
3397637
+
Pro
GGG
-
¡û
>WENV180110674
OAPN01003277
[OAPN] marine metagenome; 2011
939
1014
+
Pro
GGG
[ENA]
¢þ
>W141065577
AQPY01000803
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
13797
13722
-
Pro
GGG
[ENA]
¡û
>W141242375
CAIH01000200
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
12213
12138
-
Pro
GGG
[ENA]
¡û
>W141242401
CAII01000176
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
6466
6391
-
Pro
GGG
[ENA]
¡û
>W141242465
CAIJ01000551
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
8128
8203
+
Pro
GGG
[ENA]
¡û
>W141242508
CAIK01000430
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
6377
6302
-
Pro
GGG
[ENA]
¡û
>W141242529
CAIL01000146
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
3040
2965
-
Pro
GGG
[ENA]
¡û
>W141242568
CAIM01000415
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
3503
3428
-
Pro
GGG
[ENA]
¡û
>W141242619
CAIN01000434
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
1717
1792
+
Pro
GGG
[ENA]
¡û
>W141242662
CAIO01000480
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
2237
2162
-
Pro
GGG
[ENA]
¡û
>W141242697
CAIP01000419
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
33431
33356
-
Pro
GGG
[ENA]
¡û
>W141242727
CAIQ01000262
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
32436
32361
-
Pro
GGG
[ENA]
¡û
>C08006376
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
2223777
2223702
-
Pro
GGG
[Ensembl]
¡û
>WENV170680693
LFEF01011077
[LFEF] freshwater metagenome; waterbloom
29828
29903
+
Pro
GGG
[ENA]
¢þ
>WENV170983962
MWVV01132124
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
206
129
-
Pro
GGG
[ENA]
¢þ
>C181046168
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
2967214
2967289
+
Pro
GGG
-
¡û
>C191007289
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
181354
181279
-
Pro
GGG
-
¡û
>W1910018083
BDQK01000017
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
189927
189852
-
Pro
GGG
[ENA]
¡û
>W1910018097
BDQL01000014
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
83964
84039
+
Pro
GGG
[ENA]
¡û
>W1910020351
BDSG01000041
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
22055
22130
+
Pro
GGG
[ENA]
¡û
>W1910020396
BDSM01000025
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
50690
50765
+
Pro
GGG
[ENA]
¡û
>W1910038664
BEIU01000010
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
77722
77647
-
Pro
GGG
[ENA]
¡û
>W1910038687
BEIV01000010
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
32594
32519
-
Pro
GGG
[ENA]
¡û
>W1910067376
BEYQ01000018
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
29647
29722
+
Pro
GGG
[ENA]
¡û
>W1910067392
BFAC01000003
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
442020
442095
+
Pro
GGG
[ENA]
¡û
>W1910142344
BIFY01000095
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
15672
15597
-
Pro
GGG
[ENA]
¡û
>W1910665585
MCIH01000208
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
15384
15459
+
Pro
GGG
[ENA]
¡û
>W1910768684
MOLZ01000128
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
12429
12354
-
Pro
GGG
[ENA]
¡û
>C151079383
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2254116
2254041
-
Pro
GGG
[Ensembl]
¡û
>C151080714
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3455344
3455269
-
Pro
GGG
-
¡û
>W1510013619
BBPA01000021
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
94269
94344
+
Pro
GGG
[ENA]
¡û
>C161002802
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
1341317
1341242
-
Pro
GGG
[Ensembl]
¡û
>C131004808
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
2872642
2872717
+
Pro
GGG
[Ensembl]
¡û
>W1610550805
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
185995
186070
+
Pro
GGG
[ENA]
¡û
>W1710004731
AJHB01000733
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
2156
2081
-
Pro
GGG
[ENA]
¡û
>W1710005080
AJUS01000791
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
2156
2081
-
Pro
GGG
[ENA]
¡û
>W1710005117
AJUT01000738
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
2156
2081
-
Pro
GGG
[ENA]
¡û
>W1710005153
AJUU01000739
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
2156
2081
-
Pro
GGG
[ENA]
¡û
>W1710660682
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
185995
186070
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK