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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271292 (15 seq.)
>C025720
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
208711
208635
-
Met
CAT
[Ensembl]
¡û
>C171001403
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
208711
208635
-
Met
CAT
-
¡û
>C08010983
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
93738
93814
+
Met
CAT
[Ensembl]
¡û
>W141561628
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
99406
99330
-
Met
CAT
[ENA]
¡û
>W09106600
AAWH01000016
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
23418
23494
+
Met
CAT
[ENA]
¡û
>C141000319
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
94602
94678
+
Met
CAT
-
¡û
>C151001719
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
328297
328221
-
Met
CAT
-
¡û
>WENV029796
AACY021228847
Marine microbial communities from Global Ocean Sampling (GOS)
212
288
+
Met
CAT
[ENA]
>W1610520912
JFHK01000007
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
56289
56365
+
Met
CAT
[ENA]
¡û
>W1710616446
JFHK01000007
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
56289
56365
+
Met
CAT
[ENA]
¡û
>W1710660933
JYCX01000001
Thermotogota
Thermosipho melanesiensis [JYCX]
208711
208635
-
Met
CAT
[ENA]
¡û
>W1710660981
JYCY01000001
Thermotogota
Thermosipho melanesiensis [JYCY]
208711
208635
-
Met
CAT
[ENA]
¡û
>W1710661027
JYCZ01000001
Thermotogota
Thermosipho melanesiensis [JYCZ]
208711
208635
-
Met
CAT
[ENA]
¡û
>W1710661073
JYDA01000001
Thermotogota
Thermosipho melanesiensis [JYDA]
208606
208530
-
Met
CAT
[ENA]
¡û
>W1710661117
JYDB01000001
Thermotogota
Thermosipho melanesiensis [JYDB]
208587
208511
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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