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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271341 (96 seq.)
>W1711343472
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4365573
4365649
+
Met
CAT
[ENA]
¡û
>W1711343473
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4365881
4365957
+
Met
CAT
[ENA]
¡û
>W1711343524
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4368573
4368649
+
Met
CAT
[ENA]
¡û
>W1711343525
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4368881
4368957
+
Met
CAT
[ENA]
¡û
>W1711343600
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1103281
1103205
-
Met
CAT
[ENA]
¡û
>W1711343601
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1102973
1102897
-
Met
CAT
[ENA]
¡û
>W1711343624
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3221588
3221664
+
Met
CAT
[ENA]
¡û
>W1711343625
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3221826
3221902
+
Met
CAT
[ENA]
¡û
>W1711343694
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
6006048
6006124
+
Met
CAT
[ENA]
¡û
>W1711343695
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
6006356
6006432
+
Met
CAT
[ENA]
¡û
>W1711343771
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2855345
2855269
-
Met
CAT
[ENA]
¡û
>W1711343772
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2855107
2855031
-
Met
CAT
[ENA]
¡û
>W1711343788
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2626407
2626483
+
Met
CAT
[ENA]
¡û
>W1711343789
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2626645
2626721
+
Met
CAT
[ENA]
¡û
>W1711343879
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2874512
2874436
-
Met
CAT
[ENA]
¡û
>W1711343880
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2874274
2874198
-
Met
CAT
[ENA]
¡û
>W1711343894
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
955448
955524
+
Met
CAT
[ENA]
¡û
>W1711343895
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
955756
955832
+
Met
CAT
[ENA]
¡û
>W1711343942
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
718149
718225
+
Met
CAT
[ENA]
¡û
>W1711343943
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
718388
718464
+
Met
CAT
[ENA]
¡û
>W1711427805
MIFY01000029
Actinomycetota
Pseudonocardia autotrophica [MIFY]
72276
72352
+
Met
CAT
[ENA]
¡û
>W1711427806
MIFY01000029
Actinomycetota
Pseudonocardia autotrophica [MIFY]
72502
72578
+
Met
CAT
[ENA]
¡û
>W131222548
AUBJ01000001
Actinomycetota
Actinoalloteichus caeruleus DSM 43889 [AUBJ]
307719
307643
-
Met
CAT
[ENA]
¡û
>W131222549
AUBJ01000001
Actinomycetota
Actinoalloteichus caeruleus DSM 43889 [AUBJ]
305917
305841
-
Met
CAT
[ENA]
¡û
>W141185570
AYJW01000004
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
104216
104290
+
Met
CAT
[ENA]
¡û
>W141185571
AYJW01000004
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
104484
104558
+
Met
CAT
[ENA]
¡û
>W141259309
CBYP010000042
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
67155
67081
-
Met
CAT
[ENA]
¡û
>WENV183716241
PDWI01296398
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1612
1538
-
fMet
CAT
[ENA]
¢þ
>WENV183722095
PDWJ01105349
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
600
674
+
fMet
CAT
[ENA]
¢þ
>WENV183722401
PDWJ01125473
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
599
673
+
fMet
CAT
[ENA]
¢þ
>WENV170024838
BCQL01138207
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
234
308
+
Met
CAT
[ENA]
¢þ
>C181124958
CP025990
Actinomycetota
Actinoalloteichus sp. AHMU CJ021 [CP025990]
1732807
1732731
-
Met
CAT
-
¡û
>C181124959
CP025990
Actinomycetota
Actinoalloteichus sp. AHMU CJ021 [CP025990]
1731005
1730931
-
Met
CAT
-
¡û
>W141557968
JHVO01000002
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
545988
546062
+
Met
CAT
[ENA]
¡û
>W141563926
JIAI01000022
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
49106
49032
-
Met
CAT
[ENA]
¡û
>W141623178
JJSJ01000007
Actinomycetota
Mycobacterium tuberculosis NRITLD18 [JJSJ]
375
299
-
Met
CAT
[ENA]
¡û
>W141730421
JNII01000007
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
531595
531669
+
Met
CAT
[ENA]
¡û
>W141730529
JNIK01000016
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
145096
145170
+
Met
CAT
[ENA]
¡û
>W141754589
JNVU01000039
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
117108
117182
+
Met
CAT
[ENA]
¡û
>W141754590
JNVU01000039
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
117376
117450
+
Met
CAT
[ENA]
¡û
>W141757761
JNYD01000005
Actinomycetota
Pseudonocardia autotrophica [JNYD]
79385
79309
-
Met
CAT
[ENA]
¡û
>W141766192
JODV01000001
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JODV]
308237
308161
-
Met
CAT
[ENA]
¡û
>W141766193
JODV01000001
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JODV]
306435
306359
-
Met
CAT
[ENA]
¡û
>W09109046
ABTU01000013
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
133627
133703
+
Met
CAT
[ENA]
¡û
>W09109510
ABUH01000010
Actinomycetota
Nakamurella multipartita DSM 44233 [ABUH]
63296
63372
+
Met
CAT
[ENA]
¡û
>W1910547184
FZNO01000037
Actinomycetota
Blastococcus mobilis DSM 44272 [FZNO]
24049
23975
-
Met
CAT
[ENA]
¡û
>W1910548105
FZOH01000001
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
558279
558355
+
Met
CAT
[ENA]
¡û
>W1910548483
FZOO01000001
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
454079
454153
+
Met
CAT
[ENA]
¡û
>W1910646720
LWUA01000043
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
7392
7466
+
Met
CAT
[ENA]
¡û
>W1911385134
NVPT01000017
Actinomycetota
Geodermatophilus chilensis B12 [NVPT]
23031
22955
-
Met
CAT
[ENA]
¡û
>W1911492105
OBDO01000010
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
165262
165188
-
Met
CAT
[ENA]
¡û
>W1911492106
OBDO01000010
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
145206
145132
-
Met
CAT
[ENA]
¡û
>W1911495744
OBQI01000002
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
368313
368239
-
Met
CAT
[ENA]
¡û
>W1911497433
OCNK01000001
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
286225
286149
-
Met
CAT
[ENA]
¡û
>W1810121468
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4360522
4360598
+
Met
CAT
[ENA]
¡û
>W1810121469
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4360748
4360824
+
Met
CAT
[ENA]
¡û
>W1810176388
PJPW02000039
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
28279
28353
+
Met
CAT
[ENA]
¡û
>W1810364452
PVTG01000001
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
154497
154421
-
Met
CAT
[ENA]
¡û
>W1810533152
QCZF01000008
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
87935
88009
+
Met
CAT
[ENA]
¡û
>W1810609374
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
2199739
2199815
+
Met
CAT
[ENA]
¡û
>W1810676838
QKMH01000001
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
306594
306520
-
Met
CAT
[ENA]
¡û
>W1810733401
QOHF01000034
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
7644
7720
+
Met
CAT
[ENA]
¡û
>W1810733410
QOHG01000002
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
13014
12940
-
Met
CAT
[ENA]
¡û
>W1810733482
QOHH01000006
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
25679
25753
+
Met
CAT
[ENA]
¡û
>W1810915001
QVQH01000006
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
192562
192636
+
Met
CAT
[ENA]
¡û
>W1810915002
QVQH01000006
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
204915
204989
+
Met
CAT
[ENA]
¡û
>C151075011
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4637584
4637508
-
Met
CAT
-
¡û
>C151075012
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4637276
4637200
-
Met
CAT
-
¡û
>C151087151
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4617214
4617290
+
Met
CAT
-
¡û
>C151087207
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4316829
4316753
-
Met
CAT
-
¡û
>W10118385
ADUJ01000078
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
7144
7220
+
Met
CAT
[ENA]
¡û
>W10118386
ADUJ01000078
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
7452
7528
+
Met
CAT
[ENA]
¡û
>W10128093
AEGE01000076
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
16191
16267
+
Met
CAT
[ENA]
¡û
>C10107416
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
4432319
4432243
-
Met
CAT
[Ensembl]
¡û
>C10109873
CP001737
Actinomycetota
Nakamurella multipartita DSM 44233 [CP001737]
1764643
1764719
+
Met
CAT
[Ensembl]
¡û
>W1510441494
CPIR01000004
Actinomycetota
Mycobacterium tuberculosis 2568S [CPIR]
7634
7558
-
Met
CAT
[ENA]
¡û
>W11123460
ADUJ01000078
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
7144
7220
+
Met
CAT
[ENA]
¡û
>W11123461
ADUJ01000078
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
7452
7528
+
Met
CAT
[ENA]
¡û
>W11136805
AEGE01000076
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
16191
16267
+
Met
CAT
[ENA]
¡û
>C161040370
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
126733
126657
-
Met
CAT
-
¡û
>C161040418
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
1832999
1832923
-
Met
CAT
[Ensembl]
¡û
>W121021633
AGVX02000416
Actinomycetota
Actinoalloteichus spitiensis RMV-1378 [AGVX]
1705
1629
-
Met
CAT
[ENA]
¡û
>W1710512186
FMZF01000001
Actinomycetota
Geodermatophilus telluris [FMZF]
282598
282522
-
Met
CAT
[ENA]
¡û
>W1710514318
FNAW01000001
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
275612
275536
-
Met
CAT
[ENA]
¡û
>W1710515360
FNBT01000003
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
289195
289121
-
Met
CAT
[ENA]
¡û
>W1710522418
FNHE01000001
Actinomycetota
Geodermatophilus siccatus [FNHE]
309394
309318
-
Met
CAT
[ENA]
¡û
>W1710524337
FNIQ01000005
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
138480
138404
-
Met
CAT
[ENA]
¡û
>W1710530442
FNOT01000003
Actinomycetota
Geodermatophilus africanus [FNOT]
149314
149388
+
Met
CAT
[ENA]
¡û
>W1710548963
FOEE01000003
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
445883
445959
+
Met
CAT
[ENA]
¡û
>W1710554088
FOIE01000006
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
97045
97121
+
Met
CAT
[ENA]
¡û
>W1710560134
FOND01000005
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
26092
26168
+
Met
CAT
[ENA]
¡û
>W1710571776
FOWE01000007
Actinomycetota
Geodermatophilus obscurus [FOWE]
256135
256059
-
Met
CAT
[ENA]
¡û
>W1710572363
FOWQ01000002
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
284730
284656
-
Met
CAT
[ENA]
¡û
>W1710577723
FPBA01000002
Actinomycetota
Geodermatophilus amargosae [FPBA]
67241
67165
-
Met
CAT
[ENA]
¡û
>W1710584889
FQVX01000003
Actinomycetota
Geodermatophilus nigrescens [FQVX]
823556
823630
+
Met
CAT
[ENA]
¡û
>W1710593475
FRDM01000009
Actinomycetota
Geodermatophilus obscurus [FRDM]
101537
101613
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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