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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271353 (17 seq.)
>WENV170782910
MAAC01012056
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2116
2192
+
Met
CAT
[ENA]
¢þ
>W1911770248
QXIO01000015
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
64081
64005
-
Met
CAT
[ENA]
¡û
>C151093904
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
113715
113791
+
Met
CAT
-
¡û
>C151093913
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
776457
776533
+
Met
CAT
-
¡û
>C151093966
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
702923
702999
+
Met
CAT
-
¡û
>C151094023
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1368194
1368270
+
Met
CAT
-
¡û
>C151094032
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1957266
1957342
+
Met
CAT
-
¡û
>C151094070
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
335405
335481
+
Met
CAT
-
¡û
>C151094091
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
2106895
2106971
+
Met
CAT
-
¡û
>C151094150
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
930549
930473
-
Met
CAT
-
¡û
>C151094159
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
334525
334449
-
Met
CAT
-
¡û
>C151094168
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
387883
387959
+
Met
CAT
-
¡û
>C151094187
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2139079
2139155
+
Met
CAT
-
¡û
>C151094219
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
336405
336481
+
Met
CAT
-
¡û
>C151094239
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
2103639
2103715
+
Met
CAT
-
¡û
>C161041354
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
340237
340313
+
Met
CAT
[Ensembl]
¡û
>C161041372
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
2097907
2097983
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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