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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271361 (82 seq.)
>W1710921745
LNZX01000049
Alphaproteobacteria
Bartonella henselae [LNZX]
1739
1663
-
Met
CAT
[ENA]
¡û
>W1710921760
LNZY01000005
Alphaproteobacteria
Bartonella henselae [LNZY]
1525
1449
-
Met
CAT
[ENA]
¡û
>W1710921818
LNZZ01000022
Alphaproteobacteria
Bartonella henselae [LNZZ]
1526
1450
-
Met
CAT
[ENA]
¡û
>W1710921847
LOAA01000040
Alphaproteobacteria
Bartonella henselae [LOAA]
174489
174565
+
Met
CAT
[ENA]
¡û
>W1710921902
LOAB01000061
Alphaproteobacteria
Bartonella henselae [LOAB]
75949
76025
+
Met
CAT
[ENA]
¡û
>W1710921930
LOAC01000049
Alphaproteobacteria
Bartonella henselae [LOAC]
54498
54422
-
Met
CAT
[ENA]
¡û
>W1710921970
LOAD01000042
Alphaproteobacteria
Bartonella henselae [LOAD]
190083
190159
+
Met
CAT
[ENA]
¡û
>W1710921985
LOAE01000001
Alphaproteobacteria
Bartonella henselae [LOAE]
1578
1502
-
Met
CAT
[ENA]
¡û
>W1710922052
LOAF01000039
Alphaproteobacteria
Bartonella henselae [LOAF]
173273
173349
+
Met
CAT
[ENA]
¡û
>W1710922067
LOAG01000011
Alphaproteobacteria
Bartonella henselae [LOAG]
173414
173490
+
Met
CAT
[ENA]
¡û
>W1710922100
LOAH01000007
Alphaproteobacteria
Bartonella henselae [LOAH]
54505
54429
-
Met
CAT
[ENA]
¡û
>W1710922133
LOAI01000001
Alphaproteobacteria
Bartonella henselae [LOAI]
174483
174559
+
Met
CAT
[ENA]
¡û
>W1711034281
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
1152792
1152868
+
Met
CAT
[ENA]
¡û
>W1711766841
MUYW01000113
Alphaproteobacteria
Bartonella taylorii [MUYW]
2341
2417
+
Met
CAT
[ENA]
¡û
>W131160076
AQWH01000004
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
223546
223622
+
Met
CAT
[ENA]
¡û
>C003020
BX897699
Alphaproteobacteria
Bartonella henselae str. Houston-1 [BX897699]
1348005
1348081
+
Met
CAT
[Ensembl]
¡û
>C004000
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
1129906
1129982
+
Met
CAT
[Ensembl]
¡û
>C171105035
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
2448811
2448735
-
Met
CAT
-
¡û
>W141006855
AGWD01000016
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
171786
171862
+
Met
CAT
[ENA]
¡û
>W141009645
AHPB01000023
Alphaproteobacteria
Bartonella quintana JK 39 [AHPB]
383108
383184
+
Met
CAT
[ENA]
¡û
>W141009677
AHPC01000002
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
55505
55581
+
Met
CAT
[ENA]
¡û
>W141009704
AHPD01000001
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
49169
49093
-
Met
CAT
[ENA]
¡û
>W141009782
AHPE01000022
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
29590
29666
+
Met
CAT
[ENA]
¡û
>W141009821
AHPF01000013
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
55545
55621
+
Met
CAT
[ENA]
¡û
>W141009859
AHPG01000015
Alphaproteobacteria
Bartonella quintana JK 31 [AHPG]
81036
80960
-
Met
CAT
[ENA]
¡û
>W141009871
AHPH01000001
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
39135
39059
-
Met
CAT
[ENA]
¡û
>W141009933
AHPI01000036
Alphaproteobacteria
Bartonella henselae JK 53 [AHPI]
86877
86953
+
Met
CAT
[ENA]
¡û
>W141009975
AHPJ01000038
Alphaproteobacteria
Bartonella henselae str. Zeus [AHPJ]
294097
294173
+
Met
CAT
[ENA]
¡û
>W141010071
AHPL01000010
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
290813
290889
+
Met
CAT
[ENA]
¡û
>W141038056
ALVF01000059
Alphaproteobacteria
Bartonella birtlesii E7 [ALVF]
50426
50350
-
Met
CAT
[ENA]
¡û
>W141038081
ALVG01000032
Alphaproteobacteria
Bartonella birtlesii E11 [ALVG]
50414
50338
-
Met
CAT
[ENA]
¡û
>W141038118
ALVH01000027
Alphaproteobacteria
Bartonella birtlesii E4 [ALVH]
50437
50361
-
Met
CAT
[ENA]
¡û
>W141039339
ALWY01000185
Alphaproteobacteria
Bartonella birtlesii H12 [ALWY]
4513
4437
-
Met
CAT
[ENA]
¡û
>W141071302
ASIV01000006
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
138537
138613
+
Met
CAT
[ENA]
¡û
>W141222464
AZZR01000005
Alphaproteobacteria
Bartonella henselae JK 51 [AZZR]
509164
509240
+
Met
CAT
[ENA]
¡û
>W141222509
AZZS01000008
Alphaproteobacteria
Bartonella henselae JK 50 [AZZS]
303745
303821
+
Met
CAT
[ENA]
¡û
>W141222533
AZZT01000007
Alphaproteobacteria
Bartonella henselae JK 42 [AZZT]
314511
314587
+
Met
CAT
[ENA]
¡û
>W141222569
AZZU01000002
Alphaproteobacteria
Bartonella henselae JK 41 [AZZU]
311402
311478
+
Met
CAT
[ENA]
¡û
>W141222632
AZZV01000011
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
354628
354704
+
Met
CAT
[ENA]
¡û
>W141222663
AZZW01000008
Alphaproteobacteria
Bartonella quintana JK 73rel [AZZW]
944641
944717
+
Met
CAT
[ENA]
¡û
>W141222710
AZZX01000009
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
941357
941433
+
Met
CAT
[ENA]
¡û
>W141222744
AZZY01000002
Alphaproteobacteria
Bartonella quintana JK 12 [AZZY]
942925
943001
+
Met
CAT
[ENA]
¡û
>W141222795
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
939883
939959
+
Met
CAT
[ENA]
¡û
>W141245855
CALU01000009
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
113191
113267
+
Met
CAT
[ENA]
¡û
>W141245890
CALV01000035
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
40862
40786
-
Met
CAT
[ENA]
¡û
>W141245965
CALX01000217
Alphaproteobacteria
Bartonella queenslandensis AUST/NH15 [CALX]
112
36
-
Met
CAT
[ENA]
¡û
>W141246014
CALY02000056
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [CALY]
15067
15143
+
Met
CAT
[ENA]
¡û
>W141275400
JACX01000008
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
444
368
-
Met
CAT
[ENA]
¡û
>W141275427
JACY01000006
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
164523
164599
+
Met
CAT
[ENA]
¡û
>W141275576
JADB01000004
Alphaproteobacteria
Bartonella elizabethae ATCC 49927 [JADB]
4052
3976
-
Met
CAT
[ENA]
¡û
>WENV170529122
CEWJ01103988
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
665
741
+
Met
CAT
[ENA]
¢þ
>WENV170794402
MDSV01131655
[MDSV] marine metagenome; seawater
22004
22080
+
Met
CAT
[ENA]
¢þ
>WENV170892910
MDTD01044820
[MDTD] marine metagenome; seawater
4
80
+
Met
CAT
[ENA]
¢þ
>C181046379
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
1370922
1370998
+
Met
CAT
-
¡û
>C181209322
LS483373
Alphaproteobacteria
Bartonella quintana NCTC12899 [LS483373]
975791
975867
+
Met
CAT
-
¡û
>C191214149
LR134527
Alphaproteobacteria
Bartonella elizabethae NCTC12898 [LR134527]
1228578
1228654
+
Met
CAT
-
¡û
>C191214249
LR134529
Alphaproteobacteria
Bartonella vinsonii NCTC12905 [LR134529]
1487436
1487512
+
Met
CAT
-
¡û
>W1910942131
NJGE01000003
Alphaproteobacteria
Bartonella tribocorum L103 [NJGE]
157862
157938
+
Met
CAT
[ENA]
¡û
>W1910954248
NJPP01000004
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
109718
109794
+
Met
CAT
[ENA]
¡û
>C09102298
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
1624451
1624527
+
Met
CAT
[Ensembl]
¡û
>W1810365562
PVUG01000002
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
397788
397864
+
Met
CAT
[ENA]
¡û
>C151067991
CP010401
Alphaproteobacteria
Bartonella ancashensis 20.00 [CP010401]
773936
773860
-
Met
CAT
-
¡û
>C151072530
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
4503450
4503526
+
Met
CAT
[Ensembl]
¡û
>C151101971
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
1333306
1333382
+
Met
CAT
[Ensembl]
¡û
>C151102012
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
1419242
1419318
+
Met
CAT
[Ensembl]
¡û
>C151105172
LN879429
Alphaproteobacteria
Bartonella henselae MVT02 [LN879429]
1333306
1333382
+
Met
CAT
-
¡û
>W121059078
AILT01000038
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
153458
153534
+
Met
CAT
[ENA]
¡û
>W121059112
AILU01000033
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
133627
133703
+
Met
CAT
[ENA]
¡û
>W121059186
AILW01000002
Alphaproteobacteria
Bartonella elizabethae Re6043vi [AILW]
8785
8709
-
Met
CAT
[ENA]
¡û
>W121059293
AILY01000054
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [AILY]
152062
152138
+
Met
CAT
[ENA]
¡û
>W121059317
AILZ01000016
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
5039
4963
-
Met
CAT
[ENA]
¡û
>W121059450
AIMC01000032
Alphaproteobacteria
Bartonella birtlesii LL-WM9 [AIMC]
50359
50283
-
Met
CAT
[ENA]
¡û
>W121059474
AIMD01000033
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
153385
153461
+
Met
CAT
[ENA]
¡û
>W121059515
AIME01000003
Alphaproteobacteria
Bartonella alsatica IBS 382 [AIME]
16193
16117
-
Met
CAT
[ENA]
¡û
>W121059573
AIMF01000017
Alphaproteobacteria
Bartonella elizabethae F9251 [AIMF]
4197
4121
-
Met
CAT
[ENA]
¡û
>W121059656
AIMH01000035
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
7441
7365
-
Met
CAT
[ENA]
¡û
>W121084676
AKIP01000035
Alphaproteobacteria
Bartonella birtlesii IBS 325 [AKIP]
160725
160801
+
Met
CAT
[ENA]
¡û
>C131002072
CP003123
Alphaproteobacteria
Bartonella australis AUST/NH1 [CP003123]
1149106
1149182
+
Met
CAT
[Ensembl]
¡û
>C131002110
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
1245819
1245895
+
Met
CAT
[Ensembl]
¡û
>C131006631
CP003784
Alphaproteobacteria
Bartonella quintana RM-11 [CP003784]
1133596
1133672
+
Met
CAT
[Ensembl]
¡û
>W1610882056
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
1152792
1152868
+
Met
CAT
[ENA]
¡û
>W1710721099
LFMF01000004
Alphaproteobacteria
Bartonella elizabethae [LFMF]
3778
3702
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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