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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271596 (72 seq.)
>C171116300
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2765367
2765291
-
Ile
GAT
-
¡û
>C171116302
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2707841
2707765
-
Ile
GAT
-
¡û
>C171116313
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2000712
2000636
-
Ile
GAT
-
¡û
>C171130517
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2160368
2160292
-
Ile
GAT
-
¡û
>C171130520
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1854839
1854763
-
Ile
GAT
-
¡û
>C010350
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
204476
204552
+
Ile
GAT
[Ensembl]
¡û
>C010353
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
576711
576787
+
Ile
GAT
[Ensembl]
¡û
>C011104
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
261339
261415
+
Ile
GAT
[Ensembl]
¡û
>C011107
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
632139
632215
+
Ile
GAT
[Ensembl]
¡û
>WENV180026740
FTIU01067306
[FTIU] metagenome; soil
1687
1611
-
Ile
GAT
[ENA]
¢þ
>WENV180030158
FTJL01237371
[FTJL] metagenome; soil
1228
1152
-
Ile
GAT
[ENA]
¢þ
>WENV180032704
FTKD01000020
[FTKD] metagenome; soil
111951
111875
-
Ile
GAT
[ENA]
¢þ
>WENV180032843
FTKD01001697
[FTKD] metagenome; soil
2563
2487
-
Ile
GAT
[ENA]
¢þ
>WENV180033121
FTKD01411761
[FTKD] metagenome; soil
23896
23972
+
Ile
GAT
[ENA]
¢þ
>WENV180035801
FTLB01012350
[FTLB] metagenome; soil
4034
3958
-
Ile
GAT
[ENA]
¢þ
>WENV180035902
FTLB01046262
[FTLB] metagenome; soil
682
606
-
Ile
GAT
[ENA]
¢þ
>WENV180247211
OBEQ010006617
[OBEQ] groundwater metagenome; groundwater
497
573
+
Ile
GAT
[ENA]
¢þ
>WENV180309066
OBJR01492781
[OBJR] soil metagenome; soil
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV180384075
OBOW01004478
[OBOW] marine metagenome; seawater
215
291
+
Ile
GAT
[ENA]
¢þ
>WENV181323497
OFKY01002038
[OFKY] marine metagenome; sea ice
186
262
+
Ile
GAT
[ENA]
¢þ
>WENV181839545
OGVO01003056
[OGVO] freshwater metagenome; freshwater
572
648
+
Ile
GAT
[ENA]
¢þ
>WENV183614519
OODW01000007
[OODW] marine metagenome; sea ice
4026
3950
-
Ile
GAT
[ENA]
¢þ
>WENV183617987
OOFL01000960
[OOFL] marine metagenome; seawater
1147
1071
-
Ile
GAT
[ENA]
¢þ
>WENV183697680
OUNK010017618
[OUNK] metagenome; soil
1388
1312
-
Ile
GAT
[ENA]
¢þ
>WENV183733472
PJTY01002594
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2460
2384
-
Ile
GAT
[ENA]
¢þ
>WENV183734682
PJTZ01039493
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
203
279
+
Ile
GAT
[ENA]
¢þ
>WENV183739234
PJUE01004204
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2075
1999
-
Ile
GAT
[ENA]
¢þ
>WENV183744332
PJUK01008578
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
338
262
-
Ile
GAT
[ENA]
¢þ
>WENV170714463
LNFM01075057
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1590
1514
-
Ile
GAT
[ENA]
¢þ
>WENV170961916
MLJW01006657
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
310
386
+
Ile
GAT
[ENA]
¢þ
>W1910126430
BGOW01000023
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
3826
3750
-
Ile
GAT
[ENA]
¡û
>W1910128307
BHGL01000031
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
245
169
-
Ile
GAT
[ENA]
¡û
>W1911572367
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3251140
3251216
+
Ile
GAT
[ENA]
¡û
>W1911572392
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1799937
1799861
-
Ile
GAT
[ENA]
¡û
>W1911572394
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1519626
1519550
-
Ile
GAT
[ENA]
¡û
>W1911647624
QAJP01000012
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
2176
2252
+
Ile
GAT
[ENA]
¡û
>W1911802794
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3111453
3111377
-
Ile
GAT
[ENA]
¡û
>W1911802796
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3069675
3069599
-
Ile
GAT
[ENA]
¡û
>W1911802817
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
524024
524100
+
Ile
GAT
[ENA]
¡û
>W1911802819
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1573852
1573776
-
Ile
GAT
[ENA]
¡û
>W1810297237
PTLZ01000008
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
2160
2236
+
Ile
GAT
[ENA]
¡û
>W1810326789
PUGF01000047
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
3869
3793
-
Ile
GAT
[ENA]
¡û
>W1810399996
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
2849086
2849010
-
Ile
GAT
[ENA]
¡û
>W1810400021
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1658033
1658109
+
Ile
GAT
[ENA]
¡û
>W1810400033
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
5023
4947
-
Ile
GAT
[ENA]
¡û
>W1810400036
PYFP01000003
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
517399
517323
-
Ile
GAT
[ENA]
¡û
>W1810400038
PYFP01000003
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
4973
4897
-
Ile
GAT
[ENA]
¡û
>W1810400043
PYFP01000006
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
5468
5392
-
Ile
GAT
[ENA]
¡û
>C151062583
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
879470
879546
+
Ile
GAT
[Ensembl]
¡û
>C151062610
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
5110270
5110194
-
Ile
GAT
[Ensembl]
¡û
>C151062612
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
4858309
4858233
-
Ile
GAT
[Ensembl]
¡û
>C11105058
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
830846
830922
+
Ile
GAT
[Ensembl]
¡û
>C11105077
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4697619
4697543
-
Ile
GAT
[Ensembl]
¡û
>C11105079
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4445982
4445906
-
Ile
GAT
[Ensembl]
¡û
>C161053579
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
1043350
1043426
+
Ile
GAT
[Ensembl]
¡û
>C161053598
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
5114305
5114229
-
Ile
GAT
[Ensembl]
¡û
>C161053600
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4862465
4862389
-
Ile
GAT
[Ensembl]
¡û
>C161053627
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
657367
657443
+
Ile
GAT
-
¡û
>C161053653
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
4180777
4180701
-
Ile
GAT
-
¡û
>C161053655
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
3931505
3931429
-
Ile
GAT
-
¡û
>C161053674
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
845150
845226
+
Ile
GAT
[Ensembl]
¡û
>C161053697
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
5145699
5145623
-
Ile
GAT
[Ensembl]
¡û
>C161053699
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4787842
4787766
-
Ile
GAT
[Ensembl]
¡û
>C161053722
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
657467
657543
+
Ile
GAT
[Ensembl]
¡û
>C161053749
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
4166089
4166013
-
Ile
GAT
[Ensembl]
¡û
>C161053751
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3916765
3916689
-
Ile
GAT
[Ensembl]
¡û
>C161053772
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
784416
784492
+
Ile
GAT
[Ensembl]
¡û
>C161053797
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
5068319
5068243
-
Ile
GAT
[Ensembl]
¡û
>C161053799
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4806577
4806501
-
Ile
GAT
[Ensembl]
¡û
>W1710530388
FNOR01000042
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
3780
3704
-
Ile
GAT
[ENA]
¡û
>W1710556476
FOKF01000085
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
467
391
-
Ile
GAT
[ENA]
¡û
>W1710557555
FOLC01000053
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
3694
3618
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK