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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271615 (48 seq.)
>W1710777846
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
796290
796366
+
Ile
GAT
[ENA]
¡û
>W1710777873
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
885397
885321
-
Ile
GAT
[ENA]
¡û
>W1710777875
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
879260
879184
-
Ile
GAT
[ENA]
¡û
>W1710777877
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
873108
873032
-
Ile
GAT
[ENA]
¡û
>W1710777879
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
866971
866895
-
Ile
GAT
[ENA]
¡û
>W1710777881
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
631287
631211
-
Ile
GAT
[ENA]
¡û
>W1711227900
LXWA01000101
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
3653
3577
-
Ile
GAT
[ENA]
¡û
>W141086159
AUSW01000009
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
2231
2307
+
Ile
GAT
[ENA]
¡û
>WENV181201366
OERN01003719
[OERN] metagenome; water of meat washing
131
207
+
Ile
GAT
[ENA]
¢þ
>W141234070
BAWI01000028
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
1869
1945
+
Ile
GAT
[ENA]
¡û
>W141234110
BAWJ01000050
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
1748
1824
+
Ile
GAT
[ENA]
¡û
>WENV170562593
CZCB01003770
[CZCB] anaerobic digester metagenome; anaerobic digester
1983
2059
+
Ile
GAT
[ENA]
¢þ
>WENV170568978
FLMP01104541
[FLMP] seawater metagenome; seawater
510
586
+
Ile
GAT
[ENA]
¢þ
>WENV170688162
LFRM01231417
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2384
2308
-
Ile
GAT
[ENA]
¢þ
>WENV170723303
LSQX01263552
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
456
532
+
Ile
GAT
[ENA]
¢þ
>C191163830
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
1958
2034
+
Ile
GAT
-
¡û
>C191163832
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
198211
198287
+
Ile
GAT
-
¡û
>C191163865
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2473471
2473395
-
Ile
GAT
-
¡û
>W1910377583
FUKN01000003
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
3650
3574
-
Ile
GAT
[ENA]
¡û
>W1911203642
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1781614
1781690
+
Ile
GAT
[ENA]
¡û
>W1911203644
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1787551
1787627
+
Ile
GAT
[ENA]
¡û
>W1911203659
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
950354
950278
-
Ile
GAT
[ENA]
¡û
>W1911203661
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
219337
219413
+
Ile
GAT
[ENA]
¡û
>W1911203677
NRGY01000006
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
2360
2436
+
Ile
GAT
[ENA]
¡û
>W1810157358
PJBX01000019
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
2033
2109
+
Ile
GAT
[ENA]
¡û
>W1810596421
QGGM01000028
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
1769
1845
+
Ile
GAT
[ENA]
¡û
>C151097246
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1419297
1419221
-
Ile
GAT
-
¡û
>C151097248
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1413242
1413166
-
Ile
GAT
-
¡û
>C151097250
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1407184
1407108
-
Ile
GAT
-
¡û
>C151097252
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1401129
1401053
-
Ile
GAT
-
¡û
>C151097254
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1236917
1236841
-
Ile
GAT
-
¡û
>C151097258
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
831071
830995
-
Ile
GAT
-
¡û
>C161079261
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
768039
768115
+
Ile
GAT
[Ensembl]
¡û
>C161079273
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3255327
3255251
-
Ile
GAT
[Ensembl]
¡û
>C161079275
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3249403
3249327
-
Ile
GAT
[Ensembl]
¡û
>C161079277
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3243479
3243403
-
Ile
GAT
[Ensembl]
¡û
>C161079279
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3047227
3047151
-
Ile
GAT
[Ensembl]
¡û
>W1610112383
CZJV02000059
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
1752
1828
+
Ile
GAT
[ENA]
¡û
>W1610632737
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
789432
789356
-
Ile
GAT
[ENA]
¡û
>W1610642032
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
796290
796366
+
Ile
GAT
[ENA]
¡û
>W1610642059
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
885397
885321
-
Ile
GAT
[ENA]
¡û
>W1610642061
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
879260
879184
-
Ile
GAT
[ENA]
¡û
>W1610642063
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
873108
873032
-
Ile
GAT
[ENA]
¡û
>W1610642065
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
866971
866895
-
Ile
GAT
[ENA]
¡û
>W1610642067
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
631287
631211
-
Ile
GAT
[ENA]
¡û
>W1611011864
LXWA01000101
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
3653
3577
-
Ile
GAT
[ENA]
¡û
>W1710115087
CZJV02000059
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
1752
1828
+
Ile
GAT
[ENA]
¡û
>W1710767169
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
789432
789356
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK