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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271680 (52 seq.)
>W1710792785
LJOP01000033
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
25659
25586
-
Pro
TGG
[ENA]
¡û
>W1710792822
LJOQ01000020
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
4569
4496
-
Pro
TGG
[ENA]
¡û
>W1710792873
LJOS01000013
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
72929
73002
+
Pro
TGG
[ENA]
¡û
>W1710792903
LJOU01000012
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
8317
8244
-
Pro
TGG
[ENA]
¡û
>W1710792958
LJOV01000151
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
6863
6790
-
Pro
TGG
[ENA]
¡û
>W1710793036
LJOW01000172
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
284
357
+
Pro
TGG
[ENA]
¡û
>W1711229690
LXYR01000003
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
174650
174723
+
Pro
TGG
[ENA]
¡û
>W1711283607
LZQD01000002
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
963408
963333
-
Pro
TGG
[ENA]
¡û
>W1711629768
MPPI01000001
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
299515
299442
-
Pro
TGG
[ENA]
¡û
>W1711666615
MRCD01000014
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
48925
48852
-
Pro
TGG
[ENA]
¡û
>PL171000190
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
2092942
2092869
-
Pro
TGG
[ENA]
¡û
>W131036251
ALVJ01000035
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
196999
197072
+
Pro
TGG
[ENA]
¡û
>W131110107
APIY01000235
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
1634
1707
+
Pro
TGG
[ENA]
¡û
>W131110144
APIZ01000212
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
2110
2183
+
Pro
TGG
[ENA]
¡û
>W141022898
AJWF01000008
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
88512
88437
-
Pro
TGG
[ENA]
¡û
>W141067400
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
2230906
2230833
-
Pro
TGG
[ENA]
¡û
>W141096713
AVFS01000099
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
27121
27194
+
Pro
TGG
[ENA]
¡û
>W141096745
AVFT01000035
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
22076
22003
-
Pro
TGG
[ENA]
¡û
>W141096768
AVFU01000003
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
58437
58364
-
Pro
TGG
[ENA]
¡û
>W141096817
AVFV01000096
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
4145
4218
+
Pro
TGG
[ENA]
¡û
>W141096856
AVFW01000096
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
26426
26499
+
Pro
TGG
[ENA]
¡û
>W141096876
AVFX01000003
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
21461
21388
-
Pro
TGG
[ENA]
¡û
>W141096919
AVFY01000028
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
68651
68724
+
Pro
TGG
[ENA]
¡û
>W141096965
AVFZ01000113
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
18269
18196
-
Pro
TGG
[ENA]
¡û
>W141221413
AZYY01000104
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
4669
4742
+
Pro
TGG
[ENA]
¡û
>W141242755
CAIS01000191
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
570
643
+
Pro
TGG
[ENA]
¡û
>W141242871
CAIY01000038
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
39604
39531
-
Pro
TGG
[ENA]
¡û
>WENV183702482
PDVI01000361
[PDVI] alkali sediment metagenome; glacial lake sediment
3755
3682
-
Pro
TGG
[ENA]
¢þ
>WENV170002199
AGSF01000274
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
1733
1806
+
Pro
TGG
[ENA]
¢þ
>C181004979
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
5142975
5143048
+
Pro
TGG
-
¡û
>C191000820
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
1377328
1377255
-
Pro
TGG
-
¡û
>W1910175455
BJCD01000001
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
55718
55645
-
Pro
TGG
[ENA]
¡û
>W1910175552
BJCF01000020
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
21972
21899
-
Pro
TGG
[ENA]
¡û
>W1910194144
CZCS01000035
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
2171
2098
-
Pro
TGG
[ENA]
¡û
>W1910194182
CZCT02000074
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
10010
10083
+
Pro
TGG
[ENA]
¡û
>W1910194248
CZCU01000147
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
2236
2162
-
Pro
TGG
[ENA]
¡û
>W1910194289
CZCZ01000006
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
670427
670354
-
Pro
TGG
[ENA]
¡û
>W1911278546
NTFS01000292
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
3382
3309
-
Pro
TGG
[ENA]
¡û
>W1911581784
PGEM01000088
Cyanobacteriota
Cuspidothrix issatschenkoi CHARLIE-1 [PGEM]
33670
33743
+
Pro
TGG
[ENA]
¡û
>W1810366242
PVWG01000001
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
297746
297673
-
Pro
TGG
[ENA]
¡û
>W1810366395
PVWK01000033
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
13621
13694
+
Pro
TGG
[ENA]
¡û
>C151004190
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
1289936
1289863
-
Pro
TGG
[Ensembl]
¡û
>C151082949
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
1782647
1782721
+
Pro
TGG
-
¡û
>C131004716
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
5743362
5743289
-
Pro
TGG
[Ensembl]
¡û
>W1610656710
LJOP01000033
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
25659
25586
-
Pro
TGG
[ENA]
¡û
>W1610656747
LJOQ01000020
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
4569
4496
-
Pro
TGG
[ENA]
¡û
>W1610656837
LJOS01000013
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
72929
73002
+
Pro
TGG
[ENA]
¡û
>W1610656870
LJOT01000029
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
14992
15065
+
Pro
TGG
[ENA]
¡û
>W1610656907
LJOU01000012
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
8317
8244
-
Pro
TGG
[ENA]
¡û
>W1610656962
LJOV01000151
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
6863
6790
-
Pro
TGG
[ENA]
¡û
>W1610657040
LJOW01000172
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
284
357
+
Pro
TGG
[ENA]
¡û
>W1611013560
LXYR01000003
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
174650
174723
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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