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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271810 (42 seq.)
>W1711231737
LYAV01000300
Gammaproteobacteria
Escherichia coli [LYAV]
31375
31451
+
Pro
GGG
[ENA]
¡û
>W1711696686
MSJY02000007
Gammaproteobacteria
Shigella flexneri [MSJY]
36489
36413
-
Pro
GGG
[ENA]
¡û
>WENV180137823
OATP01000737
[OATP] human gut metagenome; faeces
3188
3264
+
Pro
GGG
[ENA]
¢þ
>W141043581
AMGB01000057
Gammaproteobacteria
Shigella flexneri 1485-80 [AMGB]
111732
111808
+
Pro
GGG
[ENA]
¡û
>W141209677
AZPD01000103
Gammaproteobacteria
Shigella flexneri 51575 [AZPD]
36951
36875
-
Pro
GGG
[ENA]
¡û
>W141241882
CAHS01000015
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
721329
721405
+
Pro
GGG
[ENA]
¡û
>C08004908
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
1412932
1412859
-
Pro
GGG
[Ensembl]
¡û
>WENV183780944
PPYF01188432
[PPYF] human gut metagenome; stool from patient with Crohn's disease
19295
19219
-
Pro
GGG
[ENA]
¢þ
>C181084861
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
2468634
2468710
+
Pro
GGG
-
¡û
>C181127834
CP026098
Gammaproteobacteria
Shigella flexneri FDAARGOS_74 [CP026098]
1889618
1889542
-
Pro
GGG
-
¡û
>C181142438
CP026831
Gammaproteobacteria
Shigella dysenteriae ATCC 12039 [CP026831]
1313740
1313664
-
Pro
GGG
-
¡û
>C191090981
CP032513
Gammaproteobacteria
Shigella flexneri SFL1520 [CP032513]
2320683
2320759
+
Pro
GGG
-
¡û
>C191120682
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
851619
851695
+
Pro
GGG
-
¡û
>W1911025925
NLRU01000005
Gammaproteobacteria
Escherichia coli MOD1-EC5121 [NLRU]
139958
139882
-
Pro
GGG
[ENA]
¡û
>W1911179158
NQMS01000002
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
218674
218598
-
Pro
GGG
[ENA]
¡û
>W1911757006
QWRS01000012
Gammaproteobacteria
Shigella flexneri DMB SH108 [QWRS]
21253
21329
+
Pro
GGG
[ENA]
¡û
>W1911759806
QWTP01000014
Gammaproteobacteria
Shigella flexneri DMB SH20170 [QWTP]
36886
36810
-
Pro
GGG
[ENA]
¡û
>W1810019652
BGQV01000003
Gammaproteobacteria
Escherichia coli TUM18560 [BGQV]
171827
171751
-
Pro
GGG
[ENA]
¡û
>W1810308421
PTSJ01000001
Gammaproteobacteria
Escherichia albertii MOD1-EC6145 [PTSJ]
170118
170194
+
Pro
GGG
[ENA]
¡û
>W1810403945
PYKM01000013
Gammaproteobacteria
Shigella sp. SHS-2 [PYKM]
21448
21524
+
Pro
GGG
[ENA]
¡û
>W1810746569
QOXA01000001
Gammaproteobacteria
Escherichia coli MOD1-ECOR15 [QOXA]
31433
31509
+
Pro
GGG
[ENA]
¡û
>C151067583
CP010376
Gammaproteobacteria
Enterobacter hormaechei subsp. steigerwaltii 34977 [CP010376]
3146072
3146148
+
Pro
GGG
-
¡û
>C151068492
CP010423
Gammaproteobacteria
Pragia fontium 24613 [CP010423]
2740719
2740795
+
Pro
GGG
[Ensembl]
¡û
>C10106566
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
1518712
1518636
-
Pro
GGG
[Ensembl]
¡û
>C10106640
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
1518755
1518679
-
Pro
GGG
[Ensembl]
¡û
>C11108955
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
3647813
3647889
+
Pro
GGG
[Ensembl]
¡û
>W1511395096
JTBI01000001
Gammaproteobacteria
Shigella flexneri FDAARGOS_74 [JTBI]
1889602
1889526
-
Pro
GGG
[ENA]
¡û
>W1510264580
CJKV01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi E98-8120 [CJKV]
459211
459287
+
Pro
GGG
[ENA]
¡û
>W1511474609
JWBZ01000208
Gammaproteobacteria
Hafnia paralvei 1133_RAQU [JWBZ]
25765
25689
-
Pro
GGG
[ENA]
¡û
>W1511478131
JWGZ01000024
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
95631
95555
-
Pro
GGG
[ENA]
¡û
>W11139205
AEJU01000009
Gammaproteobacteria
Escherichia albertii TW08933 [AEJU]
15286
15210
-
Pro
GGG
[ENA]
¡û
>W1511516579
JXWI01000003
Gammaproteobacteria
Escherichia coli OLC-975 [JXWI]
191452
191376
-
Pro
GGG
[ENA]
¡û
>W1511559677
JZZW01000003
Gammaproteobacteria
Enterobacter hormaechei 35010 [JZZW]
142515
142439
-
Pro
GGG
[ENA]
¡û
>W1511568701
LAJP01000025
Gammaproteobacteria
Shigella flexneri 3a BS1038 [LAJP]
21751
21827
+
Pro
GGG
[ENA]
¡û
>W1511569340
LAJW01000083
Gammaproteobacteria
Shigella flexneri 3a BS1061 [LAJW]
21261
21337
+
Pro
GGG
[ENA]
¡û
>W1511692847
LFZH01000005
Gammaproteobacteria
Escherichia coli IH53473 [LFZH]
1425268
1425344
+
Pro
GGG
[ENA]
¡û
>W11161892
AFGW01000050
Gammaproteobacteria
Shigella flexneri VA-6 [AFGW]
152972
153048
+
Pro
GGG
[ENA]
¡û
>W121091483
AKMX01000071
Gammaproteobacteria
Shigella flexneri K-1770 [AKMX]
64421
64497
+
Pro
GGG
[ENA]
¡û
>W1610011106
AMWM01000144
Gammaproteobacteria
Shigella flexneri S5644 [AMWM]
57142
57218
+
Pro
GGG
[ENA]
¡û
>W1610611045
LGBG01000026
Gammaproteobacteria
Escherichia coli [LGBG]
73482
73406
-
Pro
GGG
[ENA]
¡û
>W1710010890
AMWM01000144
Gammaproteobacteria
Shigella flexneri S5644 [AMWM]
57142
57218
+
Pro
GGG
[ENA]
¡û
>W1710732551
LGBG01000026
Gammaproteobacteria
Escherichia coli [LGBG]
73482
73406
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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