tRNA genes clustered and arranged according to each identical group

HIT: 1 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.271893 (89 seq.)
>W1710862031 LMEC01000011 Betaproteobacteria Massilia sp. Root418 [LMEC] 967187 967263 + Pro GGG [ENA] ¡û
>W1710893288 LNEP01000001 Betaproteobacteria Betaproteobacteria bacterium Ga0077540 [LNEP] 116154 116230 + Pro GGG [ENA] ¡û
>W1711224674 LXUF01000016 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 80676 80752 + Pro GGG [ENA] ¡û
>W1711430726 MIJG01000008 Betaproteobacteria Herbaspirillum camelliae WT00C [MIJG] 119746 119822 + Pro GGG [ENA] ¡û
>W1711765127 MUXB01000114 Betaproteobacteria Herbaspirillum sp. VT-16-41 [MUXB] 101332 101408 + Pro GGG [ENA] ¡û
>W1712110257 NJGU01000001 Betaproteobacteria Herbaspirillum robiniae HZ10 [NJGU] 580403 580327 - Pro GGG [ENA] ¡û
>W1712110310 NJGV01000002 Betaproteobacteria Herbaspirillum aquaticum [NJGV] 113574 113650 + Pro GGG [ENA] ¡û
>C171021210 CP013136 Betaproteobacteria Herbaspirillum seropedicae AU14040 [CP013136] 2253610 2253686 + Pro GGG - ¡û
>C171085397 CP018845 Betaproteobacteria Herbaspirillum robiniae AA6 [CP018845] 1407727 1407651 - Pro GGG - ¡û
>W131046006 AMSA01000003 Betaproteobacteria Herbaspirillum rubrisubalbicans Os45 [AMSA] 369344 369420 + Pro GGG [ENA] ¡û
>W131046048 AMSB01000001 Betaproteobacteria Herbaspirillum rubrisubalbicans Os34 [AMSB] 381400 381476 + Pro GGG [ENA] ¡û
>W131062294 ANJR01000025 Betaproteobacteria Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR] 445301 445225 - Pro GGG [ENA] ¡û
>W131164725 ARBA01000002 Betaproteobacteria Methylotenera mobilis 13 [ARBA] 588219 588295 + Pro GGG [ENA] ¡û
>W131186415 ARWC01000001 Betaproteobacteria Methylotenera sp. 1P/1 [ARWC] 895242 895166 - Pro GGG [ENA] ¡û
>C010383 CU207211 Betaproteobacteria Herminiimonas arsenicoxydans [CU207211] 1806831 1806755 - Pro GGG [Ensembl] ¡û
>C013396 CP000284 Betaproteobacteria Methylobacillus flagellatus KT [CP000284] 2135084 2135008 - Pro GGG [Ensembl] ¡û
>W141003836 AEEC02000029 Betaproteobacteria Herbaspirillum frisingense GSF30 [AEEC] 51507 51583 + Pro GGG [ENA] ¡û
>WENV180344769 OBLL01173673 [OBLL] soil metagenome; soil 113 37 - Pro GGG [ENA] ¢þ
>WENV181222651 OFDC01000049 [OFDC] hot springs metagenome; Water 14211 14287 + Pro GGG [ENA] ¢þ
>WENV181226745 OFDN01000033 [OFDN] hot springs metagenome; Water 14187 14263 + Pro GGG [ENA] ¢þ
>W141223518 BADJ01000086 Betaproteobacteria Herbaspirillum sp. B501 [BADJ] 16767 16691 - Pro GGG [ENA] ¡û
>W141229557 BAMT01000016 Betaproteobacteria Methylobacillus glycogenes JCM 2850 [BAMT] 33484 33408 - Pro GGG [ENA] ¡û
>W141258889 CBXX010000003 Betaproteobacteria Herbaspirillum sp. RV1423 [CBXX] 83441 83365 - Pro GGG [ENA] ¡û
>W141350160 JCKJ01000001 Betaproteobacteria Methylophilaceae bacterium 11 [JCKJ] 1771284 1771208 - Pro GGG [ENA] ¡û
>WENV183726895 PJTO01000400 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 2635 2559 - Pro GGG [ENA] ¢þ
>WENV183727320 PJTO01027257 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 542 466 - Pro GGG [ENA] ¢þ
>WENV183727802 PJTP01000483 [PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment 2855 2931 + Pro GGG [ENA] ¢þ
>WENV183727994 PJTP01013025 [PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment 766 690 - Pro GGG [ENA] ¢þ
>WENV183730135 PJTR01001137 [PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment 2204 2280 + Pro GGG [ENA] ¢þ
>WENV183731147 PJTS01013292 [PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment 806 730 - Pro GGG [ENA] ¢þ
>WENV183734904 PJUA01000127 [PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment 37429 37353 - Pro GGG [ENA] ¢þ
>WENV183735808 PJUB01003497 [PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment 1318 1394 + Pro GGG [ENA] ¢þ
>WENV183736476 PJUC01006054 [PJUC] soil metagenome; Soil enriched on filter paper 1078 1002 - Pro GGG [ENA] ¢þ
>WENV183736798 PJUD01000032 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 112649 112573 - Pro GGG [ENA] ¢þ
>WENV183737970 PJUD01058931 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 434 510 + Pro GGG [ENA] ¢þ
>WENV183739138 PJUE01002211 [PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment 1175 1099 - Pro GGG [ENA] ¢þ
>WENV183739601 PJUE01038539 [PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment 317 393 + Pro GGG [ENA] ¢þ
>WENV183740631 PJUF01004750 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 2660 2584 - Pro GGG [ENA] ¢þ
>WENV183744310 PJUK01006443 [PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment 521 597 + Pro GGG [ENA] ¢þ
>ENV08001404 ABMY01018370 fish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling 80 4 - Pro GGG [ENA] ¡û
>ENV08001428 ABMZ01010850 fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease 20 96 + Pro GGG [ENA] ¡û
>ENV08001431 ABMZ01016335 fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease 17 93 + Pro GGG [ENA] ¡û
>ENV08001445 ABNA01023203 fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling 24 100 + Pro GGG [ENA] ¡û
>WENV170008331 ANMQ01001214 [ANMQ] wasp metagenome; Encarsia pergandiella (wasp) 1413 1337 - Pro GGG [ENA] ¢þ
>WENV170201753 CEPQ01049275 [CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5791 5715 - Pro GGG [ENA] ¢þ
>WENV170565524 FJVX01000870 [FJVX] metagenome; soil 132 56 - Pro GGG [ENA] ¢þ
>WENV170654476 JRYL01000022 [JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different 271847 271771 - Pro GGG [ENA] ¢þ
>WENV170707222 LNAP01015508 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 594 518 - Pro GGG [ENA] ¢þ
>WENV170708927 LNFM01000032 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 111351 111427 + Pro GGG [ENA] ¢þ
>WENV170954401 MJUG01005634 [MJUG] soil metagenome; viral particles from soil sample MS1 423 347 - Pro GGG [ENA] ¢þ
>WENV170961759 MLJW01001005 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 3524 3600 + Pro GGG [ENA] ¢þ
>WENV170961877 MLJW01004181 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 49 125 + Pro GGG [ENA] ¢þ
>C191029341 CP024996 Betaproteobacteria Herbaspirillum rubrisubalbicans DSM 11543 [CP024996] 2206107 2206183 + Pro GGG - ¡û
>C191124237 CP034395 Betaproteobacteria Herbaspirillum seropedicae AU13965 [CP034395] 2134025 2134101 + Pro GGG - ¡û
>C191156624 CP037993 Betaproteobacteria Herbaspirillum huttiense NFYY 53159 [CP037993] 2279325 2279401 + Pro GGG - ¡û
>W09101004 AADX02000003 Betaproteobacteria Methylobacillus flagellatus KT [AADX] 221000 220924 - Pro GGG [ENA] ¡û
>W141819360 JQMG01000001 Betaproteobacteria Methylotenera sp. L2L1 [JQMG] 1732850 1732926 + Pro GGG [ENA] ¡û
>W1910547760 FZOA01000008 Betaproteobacteria Methylobacillus rhizosphaerae Ca-68 [FZOA] 65725 65801 + Pro GGG [ENA] ¡û
>W1910577846 JUGD01000004 Betaproteobacteria Herbaspirillum rubrisubalbicans Os38 [JUGD] 101457 101381 - Pro GGG [ENA] ¡û
>W1910578281 JWJC01000001 Betaproteobacteria Herbaspirillum rubrisubalbicans Os44 [JWJC] 366242 366318 + Pro GGG [ENA] ¡û
>C09107806 CP001672 Betaproteobacteria Methylotenera mobilis JLW8 [CP001672] 1726692 1726616 - Pro GGG [Ensembl] ¡û
>W1911279037 NTGB01000001 Betaproteobacteria Polynucleobacter rarus MT-CBb6A5 [NTGB] 497760 497836 + Pro GGG [ENA] ¡û
>W1911624003 PQVH01000011 Betaproteobacteria Methylotenera oryzisoli La3113 [PQVH] 58448 58372 - Pro GGG [ENA] ¡û
>W1911647586 QAJP01000002 Betaproteobacteria Herminiimonas sp. KBW02 [QAJP] 218829 218905 + Pro GGG [ENA] ¡û
>W1911802871 QYUP01000149 Betaproteobacteria Massilia cavernae K1S02-61 [QYUP] 31184 31260 + Pro GGG [ENA] ¡û
>SRA1001480 SRR001066.21763 Tilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154) 80 4 - Pro GGG [SRA]
>SRA1001513 SRR001067.55421 Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155) 20 96 + Pro GGG [SRA]
>SRA1001515 SRR001067.56057 Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155) 17 93 + Pro GGG [SRA]
>SRA1001516 SRR001067.65728 Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155) 17 93 + Pro GGG [SRA]
>SRA1001523 SRR001068.21207 Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156) 24 100 + Pro GGG [SRA]
>W1810194037 PKOI01000007 Betaproteobacteria Herbaspirillum sp. BH-1 [PKOI] 257300 257224 - Pro GGG [ENA] ¡û
>C151087573 CP011930 Betaproteobacteria Herbaspirillum seropedicae Z67 [CP011930] 2278286 2278362 + Pro GGG [Ensembl] ¡û
>ENV09000700 ABSP01017909 Freshwater sediment metagenome lwMethane_C1 55 131 + Pro GGG [ENA] ¡û
>ENV09001285 ABSR01000468 Freshwater sediment metagenome lwMethylamine_C1 592 516 - Pro GGG [ENA] ¡û
>ENV09001373 ABSR01003855 Freshwater sediment metagenome lwMethylamine_C1 4612 4536 - Pro GGG [ENA] ¡û
>ENV09001388 ABSR01004349 Freshwater sediment metagenome lwMethylamine_C1 1423 1499 + Pro GGG [ENA] ¡û
>ENV09001585 ABSR01033817 Freshwater sediment metagenome lwMethylamine_C1 616 540 - Pro GGG [ENA] ¡û
>ENV09001600 ABSR01035625 Freshwater sediment metagenome lwMethylamine_C1 221 297 + Pro GGG [ENA] ¡û
>C10107808 CP002039 Betaproteobacteria Herbaspirillum seropedicae SmR1 [CP002039] 2278457 2278533 + Pro GGG [Ensembl] ¡û
>W1511431991 JUGE01000001 Betaproteobacteria Methylotenera sp. N17 [JUGE] 1421965 1421889 - Pro GGG [ENA] ¡û
>W1511433526 JUHH01000001 Betaproteobacteria Methylotenera sp. G11 [JUHH] 98974 99050 + Pro GGG [ENA] ¡û
>C161060446 CP013737 Betaproteobacteria Herbaspirillum rubrisubalbicans M1 [CP013737] 2188757 2188833 + Pro GGG [Ensembl] ¡û
>W121068696 AJVC01000003 Betaproteobacteria Herbaspirillum sp. GW103 [AJVC] 757178 757254 + Pro GGG [ENA] ¡û
>W121086396 AKJW01000083 Betaproteobacteria Herbaspirillum sp. CF444 [AKJW] 77994 77918 - Pro GGG [ENA] ¡û
>W1610071829 BCUJ01000003 Betaproteobacteria Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ] 148842 148918 + Pro GGG [ENA] ¡û
>W1610724377 LMEC01000011 Betaproteobacteria Massilia sp. Root418 [LMEC] 967187 967263 + Pro GGG [ENA] ¡û
>W1610753554 LNEP01000001 Betaproteobacteria Betaproteobacteria bacterium Ga0077540 [LNEP] 116154 116230 + Pro GGG [ENA] ¡û
>W1611008638 LXUF01000016 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 80676 80752 + Pro GGG [ENA] ¡û
>W1710069031 BCUJ01000003 Betaproteobacteria Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ] 148842 148918 + Pro GGG [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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