Select
|
Sequence ID |
Genome ID (or Accession No.) |
Phylum/Class (Sample source for ENV) |
Species |
Start |
End |
Direction |
AA |
Anticodon |
Genome/Seq. Info. |
Decision |
Identical group No.271893 (89 seq.) |
|
>W1710862031 |
LMEC01000011 |
Betaproteobacteria |
Massilia sp. Root418 [LMEC] |
967187 |
967263 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1710893288 |
LNEP01000001 |
Betaproteobacteria |
Betaproteobacteria bacterium Ga0077540 [LNEP] |
116154 |
116230 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1711224674 |
LXUF01000016 |
Betaproteobacteria |
Methylovorus sp. MM2 MM1 [LXUF] |
80676 |
80752 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1711430726 |
MIJG01000008 |
Betaproteobacteria |
Herbaspirillum camelliae WT00C [MIJG] |
119746 |
119822 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1711765127 |
MUXB01000114 |
Betaproteobacteria |
Herbaspirillum sp. VT-16-41 [MUXB] |
101332 |
101408 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1712110257 |
NJGU01000001 |
Betaproteobacteria |
Herbaspirillum robiniae HZ10 [NJGU] |
580403 |
580327 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W1712110310 |
NJGV01000002 |
Betaproteobacteria |
Herbaspirillum aquaticum [NJGV] |
113574 |
113650 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>C171021210 |
CP013136 |
Betaproteobacteria |
Herbaspirillum seropedicae AU14040 [CP013136] |
2253610 |
2253686 |
+ |
Pro |
GGG |
- |
¡û |
|
>C171085397 |
CP018845 |
Betaproteobacteria |
Herbaspirillum robiniae AA6 [CP018845] |
1407727 |
1407651 |
- |
Pro |
GGG |
- |
¡û |
|
>W131046006 |
AMSA01000003 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans Os45 [AMSA] |
369344 |
369420 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W131046048 |
AMSB01000001 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans Os34 [AMSB] |
381400 |
381476 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W131062294 |
ANJR01000025 |
Betaproteobacteria |
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR] |
445301 |
445225 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W131164725 |
ARBA01000002 |
Betaproteobacteria |
Methylotenera mobilis 13 [ARBA] |
588219 |
588295 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W131186415 |
ARWC01000001 |
Betaproteobacteria |
Methylotenera sp. 1P/1 [ARWC] |
895242 |
895166 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>C010383 |
CU207211 |
Betaproteobacteria |
Herminiimonas arsenicoxydans [CU207211] |
1806831 |
1806755 |
- |
Pro |
GGG |
[Ensembl] |
¡û |
|
>C013396 |
CP000284 |
Betaproteobacteria |
Methylobacillus flagellatus KT [CP000284] |
2135084 |
2135008 |
- |
Pro |
GGG |
[Ensembl] |
¡û |
|
>W141003836 |
AEEC02000029 |
Betaproteobacteria |
Herbaspirillum frisingense GSF30 [AEEC] |
51507 |
51583 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>WENV180344769 |
OBLL01173673 |
[OBLL] soil metagenome; soil |
|
113 |
37 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV181222651 |
OFDC01000049 |
[OFDC] hot springs metagenome; Water |
|
14211 |
14287 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV181226745 |
OFDN01000033 |
[OFDN] hot springs metagenome; Water |
|
14187 |
14263 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>W141223518 |
BADJ01000086 |
Betaproteobacteria |
Herbaspirillum sp. B501 [BADJ] |
16767 |
16691 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W141229557 |
BAMT01000016 |
Betaproteobacteria |
Methylobacillus glycogenes JCM 2850 [BAMT] |
33484 |
33408 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W141258889 |
CBXX010000003 |
Betaproteobacteria |
Herbaspirillum sp. RV1423 [CBXX] |
83441 |
83365 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W141350160 |
JCKJ01000001 |
Betaproteobacteria |
Methylophilaceae bacterium 11 [JCKJ] |
1771284 |
1771208 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>WENV183726895 |
PJTO01000400 |
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment |
|
2635 |
2559 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183727320 |
PJTO01027257 |
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment |
|
542 |
466 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183727802 |
PJTP01000483 |
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment |
|
2855 |
2931 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183727994 |
PJTP01013025 |
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment |
|
766 |
690 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183730135 |
PJTR01001137 |
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment |
|
2204 |
2280 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183731147 |
PJTS01013292 |
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment |
|
806 |
730 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183734904 |
PJUA01000127 |
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment |
|
37429 |
37353 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183735808 |
PJUB01003497 |
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment |
|
1318 |
1394 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183736476 |
PJUC01006054 |
[PJUC] soil metagenome; Soil enriched on filter paper |
|
1078 |
1002 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183736798 |
PJUD01000032 |
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment |
|
112649 |
112573 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183737970 |
PJUD01058931 |
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment |
|
434 |
510 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183739138 |
PJUE01002211 |
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment |
|
1175 |
1099 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183739601 |
PJUE01038539 |
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment |
|
317 |
393 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183740631 |
PJUF01004750 |
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips |
|
2660 |
2584 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV183744310 |
PJUK01006443 |
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment |
|
521 |
597 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>ENV08001404 |
ABMY01018370 |
fish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling |
|
80 |
4 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV08001428 |
ABMZ01010850 |
fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease |
|
20 |
96 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV08001431 |
ABMZ01016335 |
fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease |
|
17 |
93 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV08001445 |
ABNA01023203 |
fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling |
|
24 |
100 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>WENV170008331 |
ANMQ01001214 |
[ANMQ] wasp metagenome; Encarsia pergandiella (wasp) |
|
1413 |
1337 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170201753 |
CEPQ01049275 |
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) |
|
5791 |
5715 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170565524 |
FJVX01000870 |
[FJVX] metagenome; soil |
|
132 |
56 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170654476 |
JRYL01000022 |
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different |
|
271847 |
271771 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170707222 |
LNAP01015508 |
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with |
|
594 |
518 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170708927 |
LNFM01000032 |
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant |
|
111351 |
111427 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170954401 |
MJUG01005634 |
[MJUG] soil metagenome; viral particles from soil sample MS1 |
|
423 |
347 |
- |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170961759 |
MLJW01001005 |
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for |
|
3524 |
3600 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>WENV170961877 |
MLJW01004181 |
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for |
|
49 |
125 |
+ |
Pro |
GGG |
[ENA] |
¢þ |
|
>C191029341 |
CP024996 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996] |
2206107 |
2206183 |
+ |
Pro |
GGG |
- |
¡û |
|
>C191124237 |
CP034395 |
Betaproteobacteria |
Herbaspirillum seropedicae AU13965 [CP034395] |
2134025 |
2134101 |
+ |
Pro |
GGG |
- |
¡û |
|
>C191156624 |
CP037993 |
Betaproteobacteria |
Herbaspirillum huttiense NFYY 53159 [CP037993] |
2279325 |
2279401 |
+ |
Pro |
GGG |
- |
¡û |
|
>W09101004 |
AADX02000003 |
Betaproteobacteria |
Methylobacillus flagellatus KT [AADX] |
221000 |
220924 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W141819360 |
JQMG01000001 |
Betaproteobacteria |
Methylotenera sp. L2L1 [JQMG] |
1732850 |
1732926 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1910547760 |
FZOA01000008 |
Betaproteobacteria |
Methylobacillus rhizosphaerae Ca-68 [FZOA] |
65725 |
65801 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1910577846 |
JUGD01000004 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans Os38 [JUGD] |
101457 |
101381 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W1910578281 |
JWJC01000001 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans Os44 [JWJC] |
366242 |
366318 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>C09107806 |
CP001672 |
Betaproteobacteria |
Methylotenera mobilis JLW8 [CP001672] |
1726692 |
1726616 |
- |
Pro |
GGG |
[Ensembl] |
¡û |
|
>W1911279037 |
NTGB01000001 |
Betaproteobacteria |
Polynucleobacter rarus MT-CBb6A5 [NTGB] |
497760 |
497836 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1911624003 |
PQVH01000011 |
Betaproteobacteria |
Methylotenera oryzisoli La3113 [PQVH] |
58448 |
58372 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W1911647586 |
QAJP01000002 |
Betaproteobacteria |
Herminiimonas sp. KBW02 [QAJP] |
218829 |
218905 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1911802871 |
QYUP01000149 |
Betaproteobacteria |
Massilia cavernae K1S02-61 [QYUP] |
31184 |
31260 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>SRA1001480 |
SRR001066.21763 |
Tilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154) |
|
80 |
4 |
- |
Pro |
GGG |
[SRA] |
|
|
>SRA1001513 |
SRR001067.55421 |
Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155) |
|
20 |
96 |
+ |
Pro |
GGG |
[SRA] |
|
|
>SRA1001515 |
SRR001067.56057 |
Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155) |
|
17 |
93 |
+ |
Pro |
GGG |
[SRA] |
|
|
>SRA1001516 |
SRR001067.65728 |
Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155) |
|
17 |
93 |
+ |
Pro |
GGG |
[SRA] |
|
|
>SRA1001523 |
SRR001068.21207 |
Tilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156) |
|
24 |
100 |
+ |
Pro |
GGG |
[SRA] |
|
|
>W1810194037 |
PKOI01000007 |
Betaproteobacteria |
Herbaspirillum sp. BH-1 [PKOI] |
257300 |
257224 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>C151087573 |
CP011930 |
Betaproteobacteria |
Herbaspirillum seropedicae Z67 [CP011930] |
2278286 |
2278362 |
+ |
Pro |
GGG |
[Ensembl] |
¡û |
|
>ENV09000700 |
ABSP01017909 |
Freshwater sediment metagenome lwMethane_C1 |
|
55 |
131 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV09001285 |
ABSR01000468 |
Freshwater sediment metagenome lwMethylamine_C1 |
|
592 |
516 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV09001373 |
ABSR01003855 |
Freshwater sediment metagenome lwMethylamine_C1 |
|
4612 |
4536 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV09001388 |
ABSR01004349 |
Freshwater sediment metagenome lwMethylamine_C1 |
|
1423 |
1499 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV09001585 |
ABSR01033817 |
Freshwater sediment metagenome lwMethylamine_C1 |
|
616 |
540 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>ENV09001600 |
ABSR01035625 |
Freshwater sediment metagenome lwMethylamine_C1 |
|
221 |
297 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>C10107808 |
CP002039 |
Betaproteobacteria |
Herbaspirillum seropedicae SmR1 [CP002039] |
2278457 |
2278533 |
+ |
Pro |
GGG |
[Ensembl] |
¡û |
|
>W1511431991 |
JUGE01000001 |
Betaproteobacteria |
Methylotenera sp. N17 [JUGE] |
1421965 |
1421889 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W1511433526 |
JUHH01000001 |
Betaproteobacteria |
Methylotenera sp. G11 [JUHH] |
98974 |
99050 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>C161060446 |
CP013737 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans M1 [CP013737] |
2188757 |
2188833 |
+ |
Pro |
GGG |
[Ensembl] |
¡û |
|
>W121068696 |
AJVC01000003 |
Betaproteobacteria |
Herbaspirillum sp. GW103 [AJVC] |
757178 |
757254 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W121086396 |
AKJW01000083 |
Betaproteobacteria |
Herbaspirillum sp. CF444 [AKJW] |
77994 |
77918 |
- |
Pro |
GGG |
[ENA] |
¡û |
|
>W1610071829 |
BCUJ01000003 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ] |
148842 |
148918 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1610724377 |
LMEC01000011 |
Betaproteobacteria |
Massilia sp. Root418 [LMEC] |
967187 |
967263 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1610753554 |
LNEP01000001 |
Betaproteobacteria |
Betaproteobacteria bacterium Ga0077540 [LNEP] |
116154 |
116230 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1611008638 |
LXUF01000016 |
Betaproteobacteria |
Methylovorus sp. MM2 MM1 [LXUF] |
80676 |
80752 |
+ |
Pro |
GGG |
[ENA] |
¡û |
|
>W1710069031 |
BCUJ01000003 |
Betaproteobacteria |
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ] |
148842 |
148918 |
+ |
Pro |
GGG |
[ENA] |
¡û |
Select
|
Sequence ID |
Genome ID (or Accession No.) |
Phylum/Class (Sample source for ENV) |
Species |
Start |
End |
Direction |
AA |
Anticodon |
Genome/Seq. Info. |
Decision |