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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272214 (40 seq.)
>W131181324
ARNV01000010
Bacillota
Lacticaseibacillus paracasei LcY [ARNV]
51820
51746
-
Ala
TGC
[ENA]
¡û
>W1711588956
MODT01000028
Bacillota
Lacticaseibacillus casei [MODT]
3157
3083
-
Ala
TGC
[ENA]
¡û
>W141004476
AFYL01000041
Bacillota
Lacticaseibacillus paracasei 32G [AFYL]
734
808
+
Ala
TGC
[ENA]
¡û
>WENV180177861
OAWF01001703
[OAWF] human gut metagenome; faeces
3549
3475
-
Ala
TGC
[ENA]
¢þ
>WENV180409048
OBUT01009519
[OBUT] human gut metagenome; faeces
178
252
+
Ala
TGC
[ENA]
¢þ
>WENV180669482
OCVV011281632
[OCVV] gut metagenome; gut
16989
17064
+
Ala
TGC
[ENA]
¢þ
>WENV180669494
OCVV011281632
[OCVV] gut metagenome; gut
16989
17064
+
Ala
TGC
[ENA]
¢þ
>WENV183173523
OLPD01008979
[OLPD] human gut metagenome; faeces
2192
2118
-
Ala
TGC
[ENA]
¢þ
>WENV170690104
LFRM01325977
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1983
2055
+
Ala
TGC
[ENA]
¢þ
>C181179948
CP029546
Bacillota
Lacticaseibacillus paracasei EG9 [CP029546]
2491384
2491310
-
Ala
TGC
-
¡û
>C181179959
CP029546
Bacillota
Lacticaseibacillus paracasei EG9 [CP029546]
1825580
1825506
-
Ala
TGC
-
¡û
>C191206556
LR134322
Bacillota
Lacticaseibacillus rhamnosus NCTC13710 [LR134322]
2566651
2566577
-
Ala
TGC
-
¡û
>C191206568
LR134322
Bacillota
Lacticaseibacillus rhamnosus NCTC13710 [LR134322]
1897229
1897155
-
Ala
TGC
-
¡û
>W09101841
AAGR01000175
Bacillota
Lacticaseibacillus paracasei ATCC 334 [AAGR]
2032
1958
-
Ala
TGC
[ENA]
¡û
>W1910621375
LKFF01000073
Bacillota
Lacticaseibacillus paracasei FAM18105 [LKFF]
21759
21685
-
Ala
TGC
[ENA]
¡û
>W1910622022
LKFR01000008
Bacillota
Lacticaseibacillus paracasei FAM18149 [LKFR]
208
134
-
Ala
TGC
[ENA]
¡û
>W1910622035
LKFR01000010
Bacillota
Lacticaseibacillus paracasei FAM18149 [LKFR]
469278
469204
-
Ala
TGC
[ENA]
¡û
>W1810472707
QAGZ01000037
Bacillota
Lacticaseibacillus rhamnosus DS15_11 [QAGZ]
250
324
+
Ala
TGC
[ENA]
¡û
>W1810472818
QAHB01000034
Bacillota
Lacticaseibacillus rhamnosus DS12_11 [QAHB]
239
165
-
Ala
TGC
[ENA]
¡û
>W1810474063
QAHW01000108
Bacillota
Lactobacillus sp. DS22_6 [QAHW]
258
332
+
Ala
TGC
[ENA]
¡û
>W1810474117
QAHX01000109
Bacillota
Lactobacillus sp. DS3_6 [QAHX]
236
162
-
Ala
TGC
[ENA]
¡û
>C151010731
CP006690
Bacillota
Lacticaseibacillus casei 12A [CP006690]
278106
278180
+
Ala
TGC
[Ensembl]
¡û
>C151092416
CP012187
Bacillota
Lacticaseibacillus paracasei CAUH35 [CP012187]
2468186
2468112
-
Ala
TGC
-
¡û
>C151092427
CP012187
Bacillota
Lacticaseibacillus paracasei CAUH35 [CP012187]
1811447
1811373
-
Ala
TGC
-
¡û
>W1510005449
BAYM01000173
Bacillota
Lacticaseibacillus paracasei NRIC 0644 NRIC0644 [BAYM]
193
267
+
Ala
TGC
[ENA]
¡û
>C10108884
FM179322
Bacillota
Lacticaseibacillus rhamnosus GG [FM179322]
1929208
1929134
-
Ala
TGC
-
¡û
>W1510650361
CVQY01000018
Bacillota
Ligilactobacillus agilis Marseille [CVQY]
121
47
-
Ala
TGC
[ENA]
¡û
>W1511445922
JUWG01000150
Bacillota
Lacticaseibacillus rhamnosus 708_LRHA [JUWG]
175
101
-
Ala
TGC
[ENA]
¡û
>W1511462339
JVNI01000059
Bacillota
Lacticaseibacillus paracasei 275_LPAR [JVNI]
3157
3083
-
Ala
TGC
[ENA]
¡û
>W1511468317
JVUB01000142
Bacillota
Lacticaseibacillus paracasei 1316.rep1_LPAR [JVUB]
3110
3036
-
Ala
TGC
[ENA]
¡û
>C121005646
CP003094
Bacillota
Lacticaseibacillus rhamnosus ATCC 8530 [CP003094]
2468113
2468039
-
Ala
TGC
[Ensembl]
¡û
>C121005658
CP003094
Bacillota
Lacticaseibacillus rhamnosus ATCC 8530 [CP003094]
1820601
1820527
-
Ala
TGC
[Ensembl]
¡û
>W1610544096
JTIG01000052
Bacillota
Lacticaseibacillus rhamnosus [JTIG]
120
194
+
Ala
TGC
[ENA]
¡û
>W1610544150
JTIH01000052
Bacillota
Lacticaseibacillus rhamnosus [JTIH]
121
195
+
Ala
TGC
[ENA]
¡û
>W1610544737
JTIT01000050
Bacillota
Lacticaseibacillus rhamnosus [JTIT]
121
195
+
Ala
TGC
[ENA]
¡û
>W1610547320
JUIP01000002
Bacillota
Lacticaseibacillus rhamnosus [JUIP]
112
38
-
Ala
TGC
[ENA]
¡û
>W1710647227
JTIG01000052
Bacillota
Lacticaseibacillus rhamnosus [JTIG]
120
194
+
Ala
TGC
[ENA]
¡û
>W1710647281
JTIH01000052
Bacillota
Lacticaseibacillus rhamnosus [JTIH]
121
195
+
Ala
TGC
[ENA]
¡û
>W1710647868
JTIT01000050
Bacillota
Lacticaseibacillus rhamnosus [JTIT]
121
195
+
Ala
TGC
[ENA]
¡û
>W1710650503
JUIP01000002
Bacillota
Lacticaseibacillus rhamnosus [JUIP]
112
38
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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