This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27259 (45 seq.)
>W1711187541
LWPO01000072
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
89330
89241
-
Ser
GGA
[ENA]
¡û
>W1711680269
MRWE01000030
Gammaproteobacteria
Rouxiella badensis [MRWE]
44182
44093
-
Ser
GGA
[ENA]
¡û
>W1711680270
MRWE01000030
Gammaproteobacteria
Rouxiella badensis [MRWE]
43895
43806
-
Ser
GGA
[ENA]
¡û
>WENV180138051
OATP01003829
[OATP] human gut metagenome; faeces
2948
2859
-
Ser
GGA
[ENA]
¢þ
>WENV180143637
OATY01000019
[OATY] human gut metagenome; faeces
68672
68761
+
Ser
GGA
[ENA]
¢þ
>WENV180143638
OATY01000019
[OATY] human gut metagenome; faeces
69508
69597
+
Ser
GGA
[ENA]
¢þ
>W141264892
CCES01000028
Gammaproteobacteria
Serratia symbiotica [CCES]
207180
207091
-
Ser
GGA
[ENA]
¡û
>WENV183370980
OLXV01003768
[OLXV] human gut metagenome; feces
869
780
-
Ser
GGA
[ENA]
¢þ
>C181019055
CP016303
Gammaproteobacteria
Candidatus Hamiltonella defensa [Bemisia tabaci] MEAM1 [CP016303]
701539
701450
-
Ser
GGA
-
¡û
>C181055093
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1959065
1958976
-
Ser
GGA
-
¡û
>C181055094
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1958232
1958143
-
Ser
GGA
-
¡û
>C191152040
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1975690
1975601
-
Ser
GGA
-
¡û
>C191152041
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1974867
1974778
-
Ser
GGA
-
¡û
>W1910281695
FQXW01000012
Gammaproteobacteria
Nissabacter archeti 2134 [FQXW]
58661
58750
+
Ser
GGA
[ENA]
¡û
>W1910635631
LNJW01000025
Gammaproteobacteria
Candidatus Hamiltonella defensa [LNJW]
5308
5219
-
Ser
GGA
[ENA]
¡û
>C09103182
CP001277
Gammaproteobacteria
Candidatus Hamiltonella defensa 5AT [Acyrthosiphon pisum] T5A [CP001277]
2057793
2057704
-
Ser
GGA
[Ensembl]
¡û
>W1911179137
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
976428
976339
-
Ser
GGA
[ENA]
¡û
>W1911179138
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
975595
975506
-
Ser
GGA
[ENA]
¡û
>W1911397609
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3635057
3635146
+
Ser
GGA
[ENA]
¡û
>W1911397610
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3637101
3637190
+
Ser
GGA
[ENA]
¡û
>W1810032575
BGWW01000017
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
36325
36236
-
Ser
GGA
[ENA]
¡û
>W1810032576
BGWW01000017
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
35492
35403
-
Ser
GGA
[ENA]
¡û
>W1810181845
PJZF01000007
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
178750
178661
-
Ser
GGA
[ENA]
¡û
>W1810181945
PJZG01000029
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2013Iso5 [PJZG]
419
508
+
Ser
GGA
[ENA]
¡û
>W1810182086
PJZI01000042
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
40742
40653
-
Ser
GGA
[ENA]
¡û
>W1810182156
PJZJ01000037
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
44809
44720
-
Ser
GGA
[ENA]
¡û
>W1810182189
PJZK01000003
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso1 [PJZK]
229884
229973
+
Ser
GGA
[ENA]
¡û
>W1510058853
CCVN01000066
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa [Bemisia tabaci] [CCVN]
11121
11032
-
Ser
GGA
[ENA]
¡û
>W1511399522
JTET01000008
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
518387
518476
+
Ser
GGA
[ENA]
¡û
>W1511399523
JTET01000008
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
519225
519314
+
Ser
GGA
[ENA]
¡û
>W1511478135
JWGZ01000025
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
165982
165893
-
Ser
GGA
[ENA]
¡û
>W1511478136
JWGZ01000025
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
165149
165060
-
Ser
GGA
[ENA]
¡û
>W11141520
AENX01000009
Gammaproteobacteria
Serratia symbiotica str. Tucson [AENX]
7997
8086
+
Ser
GGA
[ENA]
¡û
>W1511586350
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
95954
96043
+
Ser
GGA
[ENA]
¡û
>W1511586351
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
98047
98136
+
Ser
GGA
[ENA]
¡û
>W11177939
AGCA01000269
Gammaproteobacteria
Candidatus Regiella insecticola insecticola R5.15 [AGCA]
7015
6926
-
Ser
GGA
[ENA]
¡û
>C161065237
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3607490
3607579
+
Ser
GGA
-
¡û
>C161065238
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3608324
3608413
+
Ser
GGA
-
¡û
>C161074230
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2073396
2073307
-
Ser
GGA
-
¡û
>C161074231
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2072573
2072484
-
Ser
GGA
-
¡û
>C161086849
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4126013
4126102
+
Ser
GGA
-
¡û
>C161086850
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4126845
4126934
+
Ser
GGA
-
¡û
>W121063700
AJLH01000030
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa MED (Bemisia tabaci) [AJLH]
4067
3978
-
Ser
GGA
[ENA]
¡û
>W1610994942
LXEX01000004
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
101844
101933
+
Ser
GGA
[ENA]
¡û
>W1610994943
LXEX01000004
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
102667
102756
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK