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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27268 (36 seq.)
>W1711307438
MAOS01000041
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
15757
15668
-
Ser
TGA
[ENA]
¡û
>W1711505721
MKVU01000006
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
272038
272127
+
Ser
TGA
[ENA]
¡û
>W1712077127
NGUQ01000035
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
168562
168651
+
Ser
TGA
[ENA]
¡û
>W1712077160
NGUR01000007
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
611322
611233
-
Ser
TGA
[ENA]
¡û
>C171007355
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
5196620
5196709
+
Ser
TGA
-
¡û
>W131155687
AQOU01000005
Betaproteobacteria
Pandoraea sp. SD6-2 [AQOU]
14805
14894
+
Ser
TGA
[ENA]
¡û
>W141091687
AUZF01000021
Betaproteobacteria
Pandoraea pnomenusa RB-44 [AUZF]
58383
58472
+
Ser
TGA
[ENA]
¡û
>WENV181308547
OFIS01075397
[OFIS] sludge metagenome; sludge
442
353
-
Ser
TGA
[ENA]
¢þ
>WENV181311888
OFJB01019418
[OFJB] sludge metagenome; sludge
273
362
+
Ser
TGA
[ENA]
¢þ
>WENV181401360
OFTX01000039
[OFTX] sludge metagenome; sludge
33340
33251
-
Ser
TGA
[ENA]
¢þ
>W141199882
AYXJ01000009
Betaproteobacteria
Pandoraea sp. E26 [AYXJ]
683115
683204
+
Ser
TGA
[ENA]
¡û
>C181008348
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
1801706
1801795
+
Ser
TGA
-
¡û
>C181014184
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
3999816
3999905
+
Ser
TGA
-
¡û
>C181224202
LT906435
Betaproteobacteria
Pandoraea sputorum NCTC13161 [LT906435]
2013669
2013580
-
Ser
TGA
-
¡û
>C191072702
CP030849
Betaproteobacteria
Pandoraea sp. XY-2 [CP030849]
3083751
3083840
+
Ser
TGA
-
¡û
>C191189004
CP041237
Betaproteobacteria
Pandoraea pnomenusa M202 [CP041237]
3277952
3278041
+
Ser
TGA
-
¡û
>C141010472
CP006900
Betaproteobacteria
Pandoraea pnomenusa 3kgm [CP006900]
1918263
1918174
-
Ser
TGA
-
¡û
>C141010791
CP006938
Betaproteobacteria
Pandoraea pnomenusa RB-44 [CP006938]
181599
181688
+
Ser
TGA
[Ensembl]
¡û
>W1910856313
NBTA01000012
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
101235
101146
-
Ser
TGA
[ENA]
¡û
>W1810427556
PYYA01000009
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
37672
37761
+
Ser
TGA
[ENA]
¡û
>C151053892
CP009553
Betaproteobacteria
Pandoraea pnomenusa DSM 16536 [CP009553]
1080866
1080955
+
Ser
TGA
-
¡û
>C151066422
CP010310
Betaproteobacteria
Pandoraea pulmonicola DSM 16583 [CP010310]
5539952
5540041
+
Ser
TGA
[Ensembl]
¡û
>C151068689
CP010431
Betaproteobacteria
Pandoraea sputorum DSM 21091 [CP010431]
2981687
2981598
-
Ser
TGA
[Ensembl]
¡û
>C151073990
CP010897
Betaproteobacteria
Pandoraea vervacti NS15 [CP010897]
3497189
3497278
+
Ser
TGA
[Ensembl]
¡û
>C151078570
CP011253
Betaproteobacteria
Pandoraea oxalativorans DSM 23570 [CP011253]
5257257
5257346
+
Ser
TGA
[Ensembl]
¡û
>C151079021
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
5224160
5224249
+
Ser
TGA
[Ensembl]
¡û
>C151083361
CP011501
Betaproteobacteria
Pandoraea apista AU2161 [CP011501]
3774979
3775068
+
Ser
TGA
[Ensembl]
¡û
>C151086746
CP011807
Betaproteobacteria
Pandoraea faecigallinarum DSM 23572 [CP011807]
514174
514263
+
Ser
TGA
[Ensembl]
¡û
>W1510100677
CEWL01000035
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
37655
37744
+
Ser
TGA
[ENA]
¡û
>W1511397443
JTCR01000020
Betaproteobacteria
Pandoraea fibrosis 6399 [JTCR]
204105
204016
-
Ser
TGA
[ENA]
¡û
>W1511397494
JTCS01000014
Betaproteobacteria
Pandoraea fibrosis 7641 [JTCS]
204105
204016
-
Ser
TGA
[ENA]
¡û
>C161017192
CP007506
Betaproteobacteria
Pandoraea pnomenusa RB38 [CP007506]
3266084
3266173
+
Ser
TGA
-
¡û
>C161056212
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
3767001
3766912
-
Ser
TGA
-
¡û
>C161056244
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
1520264
1520353
+
Ser
TGA
-
¡û
>C161086509
CP015371
Betaproteobacteria
Pandoraea pnomenusa MCB032 [CP015371]
366667
366756
+
Ser
TGA
[Ensembl]
¡û
>W121102815
AKXS01000108
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
37849
37760
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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