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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273063 (45 seq.)
>W1710796452
LJSC01000026
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
36970
36894
-
Ile
GAT
[ENA]
¡û
>W1710796467
LJSC01000040
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
36976
36900
-
Ile
GAT
[ENA]
¡û
>W1710796472
LJSC01000041
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
103676
103752
+
Ile
GAT
[ENA]
¡û
>W1710796479
LJSC01000048
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
103608
103532
-
Ile
GAT
[ENA]
¡û
>W1710796495
LJSC01000054
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
3515
3439
-
Ile
GAT
[ENA]
¡û
>W1710796498
LJSC01000055
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
3515
3439
-
Ile
GAT
[ENA]
¡û
>PL171000366
CP002019
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 plasmid:1
264392
264468
+
Ile
GAT
[ENA]
¡û
>PL171000410
CP002225
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 plasmid:pYP1
231657
231733
+
Ile
GAT
[ENA]
¡û
>PL171000910
CP012909
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 plasmid:1
61213
61289
+
Ile
GAT
[ENA]
¡û
>PL171001271
CP016593
Alphaproteobacteria
Ketogulonicigenium vulgare SKV plasmid:pKvSKV1
61210
61286
+
Ile
GAT
[ENA]
¡û
>C171064513
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
15070
15146
+
Ile
GAT
-
¡û
>C171064516
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
122114
122190
+
Ile
GAT
-
¡û
>C171064519
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
390103
390179
+
Ile
GAT
-
¡û
>C171064524
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
541689
541765
+
Ile
GAT
-
¡û
>C171064557
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2092406
2092330
-
Ile
GAT
-
¡û
>W141055784
AOSK01000116
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
16131
16207
+
Ile
GAT
[ENA]
¡û
>WENV181843791
OGVU01064747
[OGVU] freshwater metagenome; freshwater
484
408
-
Ile
GAT
[ENA]
¢þ
>WENV170382298
CETX01007718
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
898
822
-
Ile
GAT
[ENA]
¢þ
>C181081644
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1159665
1159741
+
Ile
GAT
-
¡û
>C181081663
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
3294113
3294037
-
Ile
GAT
-
¡û
>W1911787322
QXXQ01000038
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
3499
3423
-
Ile
GAT
[ENA]
¡û
>W1810504116
QBKP01000051
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
2260
2336
+
Ile
GAT
[ENA]
¡û
>C11111813
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2504197
2504273
+
Ile
GAT
[Ensembl]
¡û
>C11111816
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2611238
2611314
+
Ile
GAT
[Ensembl]
¡û
>C11111821
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2762805
2762881
+
Ile
GAT
[Ensembl]
¡û
>C11111837
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1548798
1548722
-
Ile
GAT
[Ensembl]
¡û
>C11111849
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
15070
15146
+
Ile
GAT
[Ensembl]
¡û
>C11111852
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
239955
240031
+
Ile
GAT
[Ensembl]
¡û
>C11111858
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
399998
400074
+
Ile
GAT
[Ensembl]
¡û
>C11111889
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1955713
1955637
-
Ile
GAT
[Ensembl]
¡û
>C161047241
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
129013
129089
+
Ile
GAT
-
¡û
>C161047244
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
236055
236131
+
Ile
GAT
-
¡û
>C161047249
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
387623
387699
+
Ile
GAT
-
¡û
>C161047281
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1939180
1939104
-
Ile
GAT
-
¡û
>C161099968
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
128997
129073
+
Ile
GAT
-
¡û
>C161099971
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
236031
236107
+
Ile
GAT
-
¡û
>C161099976
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
387612
387688
+
Ile
GAT
-
¡û
>C161100008
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1938133
1938057
-
Ile
GAT
-
¡û
>W1610660409
LJSC01000026
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
36970
36894
-
Ile
GAT
[ENA]
¡û
>W1610660424
LJSC01000040
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
36976
36900
-
Ile
GAT
[ENA]
¡û
>W1610660429
LJSC01000041
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
103676
103752
+
Ile
GAT
[ENA]
¡û
>W1610660436
LJSC01000048
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
103608
103532
-
Ile
GAT
[ENA]
¡û
>W1610660452
LJSC01000054
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
3515
3439
-
Ile
GAT
[ENA]
¡û
>W1610660455
LJSC01000055
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
3515
3439
-
Ile
GAT
[ENA]
¡û
>W1710564200
FOQH01000033
Alphaproteobacteria
Albimonas pacifica [FOQH]
3318
3242
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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