This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273134 (27 seq.)
>W1711718027
MTHC01000022
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
31883
31958
+
Arg
CCT
[ENA]
¡û
>C171096204
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
2365633
2365708
+
Arg
CCT
-
¡û
>C171096310
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
2368458
2368383
-
Arg
CCT
-
¡û
>WENV180735614
ODHB01000128
[ODHB] human metagenome; G_DNA_Supragingival plaque
20923
20996
+
Arg
CCT
[ENA]
¢þ
>WENV180796304
ODJB01002889
[ODJB] human metagenome; G_DNA_Supragingival plaque
2997
2922
-
Arg
CCT
[ENA]
¢þ
>WENV180859701
ODLD01002680
[ODLD] human metagenome; G_DNA_Supragingival plaque
2946
2871
-
Arg
CCT
[ENA]
¢þ
>WENV180924273
ODTK01002464
[ODTK] human metagenome; G_DNA_Supragingival plaque
5351
5426
+
Arg
CCT
[ENA]
¢þ
>WENV180928382
ODTM01040596
[ODTM] human metagenome; G_DNA_Supragingival plaque
694
767
+
Arg
CCT
[ENA]
¢þ
>WENV180934472
ODTS01000131
[ODTS] human metagenome; G_DNA_Subgingival plaque
7590
7663
+
Arg
CCT
[ENA]
¢þ
>WENV180938958
ODTX01010791
[ODTX] human metagenome; G_DNA_Supragingival plaque
1308
1233
-
Arg
CCT
[ENA]
¢þ
>WENV180963863
ODUO01000012
[ODUO] human metagenome; G_DNA_Supragingival plaque
46307
46380
+
Arg
CCT
[ENA]
¢þ
>WENV180973062
ODUW01001035
[ODUW] human metagenome; G_DNA_Supragingival plaque
14140
14215
+
Arg
CCT
[ENA]
¢þ
>WENV180982675
ODVF01000274
[ODVF] human metagenome; G_DNA_Supragingival plaque
11846
11919
+
Arg
CCT
[ENA]
¢þ
>WENV181009334
ODWE01054202
[ODWE] human metagenome; G_DNA_Supragingival plaque
74
1
-
Arg
CCT
[ENA]
¢þ
>WENV181079249
OEAS01003616
[OEAS] human metagenome; G_DNA_Supragingival plaque
12
87
+
Arg
CCT
[ENA]
¢þ
>WENV181179065
OEJT01001132
[OEJT] human metagenome; G_DNA_Supragingival plaque
2451
2376
-
Arg
CCT
[ENA]
¢þ
>WENV183508562
OMHE01001227
[OMHE] human oral metagenome; human oral
2046
1971
-
Arg
CCT
[ENA]
¢þ
>WENV183509279
OMHH01004843
[OMHH] human oral metagenome; human oral
256
331
+
Arg
CCT
[ENA]
¢þ
>WENV170684510
LFRM01043369
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
494
419
-
Arg
CCT
[ENA]
¢þ
>C191173862
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
831260
831186
-
Arg
CCT
-
¡û
>C191210877
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
827824
827749
-
Arg
CCT
-
¡û
>C191214592
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
828496
828421
-
Arg
CCT
-
¡û
>W1510061396
CCYJ01000017
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
44234
44159
-
Arg
CCT
[ENA]
¡û
>C121002969
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
832361
832286
-
Arg
CCT
[Ensembl]
¡û
>W1610074492
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
284505
284580
+
Arg
CCT
[ENA]
¡û
>W1710071610
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
284505
284580
+
Arg
CCT
[ENA]
¡û
>W1710531773
FNPU01000002
Actinomycetota
Tessaracoccus flavus [FNPU]
95143
95068
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK