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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273177 (140 seq.)
>W1711310932
MARS01000035
Bacillota
Clostridium perfringens [MARS]
77449
77525
+
Ile
GAT
[ENA]
¡û
>W1712036740
NFHR01000045
Bacillota
Clostridium perfringens [NFHR]
112
188
+
Ile
GAT
[ENA]
¡û
>W1712040380
NFKH01000059
Bacillota
Clostridium perfringens [NFKH]
471
395
-
Ile
GAT
[ENA]
¡û
>C171020916
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
3119967
3119891
-
Ile
GAT
-
¡û
>C171020952
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
2872856
2872780
-
Ile
GAT
-
¡û
>C006310
BA000016
Bacillota
Clostridium perfringens str. 13 [BA000016]
340806
340882
+
Ile
GAT
[Ensembl]
¡û
>C006333
BA000016
Bacillota
Clostridium perfringens str. 13 [BA000016]
2809862
2809786
-
Ile
GAT
[Ensembl]
¡û
>C006365
BA000016
Bacillota
Clostridium perfringens str. 13 [BA000016]
2577691
2577615
-
Ile
GAT
[Ensembl]
¡û
>C006368
BA000016
Bacillota
Clostridium perfringens str. 13 [BA000016]
2567585
2567509
-
Ile
GAT
[Ensembl]
¡û
>C006423
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
3032490
3032414
-
Ile
GAT
[Ensembl]
¡û
>C006459
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
2781593
2781517
-
Ile
GAT
[Ensembl]
¡û
>C006517
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2675533
2675457
-
Ile
GAT
[Ensembl]
¡û
>C006553
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2445091
2445015
-
Ile
GAT
[Ensembl]
¡û
>WENV180153214
OAUR01007957
[OAUR] human gut metagenome; faeces
648
724
+
Ile
GAT
[ENA]
¢þ
>WENV180168623
OAVR01004597
[OAVR] human gut metagenome; faeces
487
563
+
Ile
GAT
[ENA]
¢þ
>WENV180183894
OAWQ01013140
[OAWQ] human gut metagenome; faeces
60
136
+
Ile
GAT
[ENA]
¢þ
>WENV180226804
OBBS01002259
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
429
505
+
Ile
GAT
[ENA]
¢þ
>WENV180227041
OBBT01002977
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
398
474
+
Ile
GAT
[ENA]
¢þ
>WENV180227956
OBBV01002059
[OBBV] human gut metagenome; Infant 2 DOL 24 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180228245
OBBW01002231
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180239795
OBDB01046839
[OBDB] human gut metagenome; human gut
291
367
+
Ile
GAT
[ENA]
¢þ
>WENV180406000
OBUN01003402
[OBUN] human gut metagenome; faeces
723
799
+
Ile
GAT
[ENA]
¢þ
>WENV180407797
OBUR01001202
[OBUR] human gut metagenome; faeces
1016
1092
+
Ile
GAT
[ENA]
¢þ
>WENV180411300
OBUY01008179
[OBUY] human gut metagenome; faeces
722
646
-
Ile
GAT
[ENA]
¢þ
>WENV180444442
OBWZ01010857
[OBWZ] human gut metagenome; faeces
422
498
+
Ile
GAT
[ENA]
¢þ
>WENV180456407
OBXQ01003264
[OBXQ] human gut metagenome; faeces
1401
1477
+
Ile
GAT
[ENA]
¢þ
>WENV180556601
OCJS01009822
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180556865
OCJT01009487
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180557292
OCJV01001662
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
721
797
+
Ile
GAT
[ENA]
¢þ
>WENV180557597
OCJW01003685
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV180557922
OCJX01006563
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV180559022
OCKA01001979
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180559211
OCKB01019999
[OCKB] human gut metagenome; Infant 2 DOL 23 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180559503
OCKC01000362
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
723
799
+
Ile
GAT
[ENA]
¢þ
>WENV180559866
OCKD01001146
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV180598975
OCPN01009595
[OCPN] human gut metagenome; faeces
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV181200201
OERJ01005334
[OERJ] metagenome; water of meat washing
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV181218522
OFCM01002088
[OFCM] metagenome; Human gut stool
2259
2335
+
Ile
GAT
[ENA]
¢þ
>W08001439
ABDU01000051
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
40532
40459
-
Ile
GAT
[ENA]
¡û
>W08001444
ABDU01000052
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
1833
1909
+
Ile
GAT
[ENA]
¡û
>W08001489
ABDV01000010
Bacillota
Clostridium perfringens B str. ATCC 3626 [ABDV]
92530
92457
-
Ile
GAT
[ENA]
¡û
>W08001527
ABDV01000025
Bacillota
Clostridium perfringens B str. ATCC 3626 [ABDV]
25734
25810
+
Ile
GAT
[ENA]
¡û
>W08001572
ABDW01000008
Bacillota
Clostridium perfringens E str. JGS1987 [ABDW]
7958
8034
+
Ile
GAT
[ENA]
¡û
>W08001605
ABDW01000023
Bacillota
Clostridium perfringens E str. JGS1987 [ABDW]
38926
38853
-
Ile
GAT
[ENA]
¡û
>W08001659
ABDX01000009
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
24205
24281
+
Ile
GAT
[ENA]
¡û
>W08001688
ABDX01000026
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
38884
38811
-
Ile
GAT
[ENA]
¡û
>W08001738
ABDY01000001
Bacillota
Clostridium perfringens NCTC 8239 [ABDY]
500148
500075
-
Ile
GAT
[ENA]
¡û
>W08001789
ABDY01000020
Bacillota
Clostridium perfringens NCTC 8239 [ABDY]
39090
39017
-
Ile
GAT
[ENA]
¡û
>W08009072
ABOO01000026
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
31721
31648
-
Ile
GAT
[ENA]
¡û
>W08009077
ABOO01000032
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
1113
1189
+
Ile
GAT
[ENA]
¡û
>W08009107
ABOO01000082
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
433
360
-
Ile
GAT
[ENA]
¡û
>W08009109
ABOO01000129
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
1113
1189
+
Ile
GAT
[ENA]
¡û
>W141143035
AWRZ01000053
Bacillota
Clostridium perfringens JJC [AWRZ]
127
51
-
Ile
GAT
[ENA]
¡û
>WENV181798492
OGRV01001001
[OGRV] human gut metagenome; fecal sample 3 from infant 4
1390
1466
+
Ile
GAT
[ENA]
¢þ
>WENV182799289
OJTS01001355
[OJTS] human gut metagenome; human gut
659
735
+
Ile
GAT
[ENA]
¢þ
>WENV182804355
OJUT01000833
[OJUT] human gut metagenome; human gut
267
343
+
Ile
GAT
[ENA]
¢þ
>WENV182809604
OJWR01004335
[OJWR] human gut metagenome; human gut
648
724
+
Ile
GAT
[ENA]
¢þ
>WENV182811433
OJXK01009279
[OJXK] human gut metagenome; human gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV182817896
OJZM01001296
[OJZM] human gut metagenome; human gut
487
563
+
Ile
GAT
[ENA]
¢þ
>WENV182817899
OJZM01001296
[OJZM] human gut metagenome; human gut
3950
4026
+
Ile
GAT
[ENA]
¢þ
>WENV182831514
OKEE01007714
[OKEE] human gut metagenome; human gut
388
464
+
Ile
GAT
[ENA]
¢þ
>WENV182835063
OKFJ01004533
[OKFJ] human gut metagenome; human gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV182846156
OKJJ01000360
[OKJJ] human gut metagenome; human gut
2696
2620
-
Ile
GAT
[ENA]
¢þ
>WENV182848386
OKKG01008325
[OKKG] human gut metagenome; human gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV182852937
OKMD01002145
[OKMD] human gut metagenome; human gut
398
474
+
Ile
GAT
[ENA]
¢þ
>WENV182854771
OKMW01006290
[OKMW] human gut metagenome; human gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV182857770
OKNY01006472
[OKNY] human gut metagenome; human gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV182860732
OKOX01001777
[OKOX] human gut metagenome; human gut
161
85
-
Ile
GAT
[ENA]
¢þ
>WENV182862106
OKPJ01006047
[OKPJ] human gut metagenome; human gut
692
768
+
Ile
GAT
[ENA]
¢þ
>WENV182862731
OKPP01000905
[OKPP] human gut metagenome; human gut
2125
2049
-
Ile
GAT
[ENA]
¢þ
>WENV182863552
OKPT01004444
[OKPT] human gut metagenome; human gut
388
464
+
Ile
GAT
[ENA]
¢þ
>WENV182945267
OKVJ01032589
[OKVJ] human gut metagenome; human gut
296
372
+
Ile
GAT
[ENA]
¢þ
>WENV183074140
OLIU01009971
[OLIU] human gut metagenome; stool sample
720
796
+
Ile
GAT
[ENA]
¢þ
>WENV183083581
OLJC01002250
[OLJC] human gut metagenome; human gut
388
464
+
Ile
GAT
[ENA]
¢þ
>WENV183087430
OLJH01002541
[OLJH] human gut metagenome; human gut
703
779
+
Ile
GAT
[ENA]
¢þ
>WENV170005592
AMCI01008162
[AMCI] gut metagenome; fecal sample from gut
232
308
+
Ile
GAT
[ENA]
¢þ
>C181003064
AP017630
Bacillota
Clostridium perfringens CBA7123 [AP017630]
2859888
2859812
-
Ile
GAT
-
¡û
>C181003100
AP017630
Bacillota
Clostridium perfringens CBA7123 [AP017630]
2613965
2613889
-
Ile
GAT
-
¡û
>C181080878
CP023410
Bacillota
Clostridium perfringens LLY_N11 [CP023410]
235874
235950
+
Ile
GAT
-
¡û
>C181080914
CP023410
Bacillota
Clostridium perfringens LLY_N11 [CP023410]
469848
469924
+
Ile
GAT
-
¡û
>C181118087
CP025501
Bacillota
Clostridium perfringens EHE-NE18 [CP025501]
270058
269982
-
Ile
GAT
-
¡û
>C181118123
CP025501
Bacillota
Clostridium perfringens EHE-NE18 [CP025501]
17253
17177
-
Ile
GAT
-
¡û
>C181162262
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
3084676
3084600
-
Ile
GAT
-
¡û
>C181162298
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
2840275
2840199
-
Ile
GAT
-
¡û
>C181210599
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
3066907
3066831
-
Ile
GAT
-
¡û
>C181210635
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
2819614
2819538
-
Ile
GAT
-
¡û
>C181214882
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
3045516
3045440
-
Ile
GAT
-
¡û
>C181214918
LS483461
Bacillota
Clostridium perfringens NCTC2837 [LS483461]
2812423
2812347
-
Ile
GAT
-
¡û
>W1910693737
MDJE01000017
Bacillota
Clostridium perfringens 13/0847-D [MDJE]
289
365
+
Ile
GAT
[ENA]
¡û
>W1910693870
MDJF01000021
Bacillota
Clostridium perfringens 13/0815-D [MDJF]
183
107
-
Ile
GAT
[ENA]
¡û
>W1910693959
MDJG01000020
Bacillota
Clostridium perfringens 13/0816-B [MDJG]
183
107
-
Ile
GAT
[ENA]
¡û
>W1910694016
MDJH01000013
Bacillota
Clostridium perfringens 13/0815-C [MDJH]
233
157
-
Ile
GAT
[ENA]
¡û
>W1911723221
QRFP01000106
Bacillota
Clostridium perfringens 79385-1 [QRFP]
106
30
-
Ile
GAT
[ENA]
¡û
>W1911723296
QRFQ01000109
Bacillota
Clostridium perfringens 79385-2 [QRFQ]
170
246
+
Ile
GAT
[ENA]
¡û
>W1911723363
QRFR01000098
Bacillota
Clostridium perfringens 79385-3 [QRFR]
170
246
+
Ile
GAT
[ENA]
¡û
>W1911723430
QRFS01000111
Bacillota
Clostridium perfringens 79385-5 [QRFS]
106
30
-
Ile
GAT
[ENA]
¡û
>W1911723508
QRFT01000106
Bacillota
Clostridium perfringens 79385-6 [QRFT]
170
246
+
Ile
GAT
[ENA]
¡û
>W1911723570
QRFU01000095
Bacillota
Clostridium perfringens 79385-7 [QRFU]
170
246
+
Ile
GAT
[ENA]
¡û
>W1911723645
QRFV01000096
Bacillota
Clostridium perfringens 83921_1_2 [QRFV]
170
246
+
Ile
GAT
[ENA]
¡û
>W1911723707
QRFW01000107
Bacillota
Clostridium perfringens 83921_3_3 [QRFW]
170
246
+
Ile
GAT
[ENA]
¡û
>W1911723774
QRFX01000097
Bacillota
Clostridium perfringens 83921_3_4 [QRFX]
106
30
-
Ile
GAT
[ENA]
¡û
>W1911723921
QRHB01000155
Bacillota
Clostridium perfringens 79385-4 [QRHB]
170
246
+
Ile
GAT
[ENA]
¡û
>W1810178841
PJSI01000051
Bacillota
Clostridium perfringens TAM-NE46 [PJSI]
3006
2930
-
Ile
GAT
[ENA]
¡û
>W1810178942
PJSJ01000103
Bacillota
Clostridium perfringens TAM-NE42 [PJSJ]
107
31
-
Ile
GAT
[ENA]
¡û
>W1810179011
PJSK01000062
Bacillota
Clostridium perfringens TAM-NE40 [PJSK]
167
243
+
Ile
GAT
[ENA]
¡û
>W1810179180
PJSM01000018
Bacillota
Clostridium perfringens 67 [PJSM]
1017
941
-
Ile
GAT
[ENA]
¡û
>W1810179275
PJSN01000057
Bacillota
Clostridium perfringens 37 [PJSN]
473
397
-
Ile
GAT
[ENA]
¡û
>W1810179426
PJSP01000083
Bacillota
Clostridium perfringens SAF-1 [PJSP]
167
243
+
Ile
GAT
[ENA]
¡û
>W1810179495
PJSQ01000069
Bacillota
Clostridium perfringens Pennington [PJSQ]
1527
1603
+
Ile
GAT
[ENA]
¡û
>W1810179780
PJSU01000238
Bacillota
Clostridium perfringens NobL1 [PJSU]
79
3
-
Ile
GAT
[ENA]
¡û
>W1810179858
PJSV01000041
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
2875
2799
-
Ile
GAT
[ENA]
¡û
>W1810179945
PJSW01000120
Bacillota
Clostridium perfringens NAG-NE1 [PJSW]
107
31
-
Ile
GAT
[ENA]
¡û
>W1810180091
PJSY01000196
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
1328
1404
+
Ile
GAT
[ENA]
¡û
>W1810180093
PJSY01000201
Bacillota
Clostridium perfringens ITX1105-12MP [PJSY]
202
278
+
Ile
GAT
[ENA]
¡û
>W1810180160
PJSZ01000064
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
1531
1607
+
Ile
GAT
[ENA]
¡û
>W1810180261
PJTA01000018
Bacillota
Clostridium perfringens FC2 [PJTA]
14432
14508
+
Ile
GAT
[ENA]
¡û
>W1810180362
PJTB01000045
Bacillota
Clostridium perfringens EUR-NE15 [PJTB]
865
789
-
Ile
GAT
[ENA]
¡û
>W1810180440
PJTC01000044
Bacillota
Clostridium perfringens EHE-NE7 [PJTC]
3026
2950
-
Ile
GAT
[ENA]
¡û
>W1810180593
PJTE01000039
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
343
267
-
Ile
GAT
[ENA]
¡û
>W1810180736
PJTG01000105
Bacillota
Clostridium perfringens WER-NE36 [PJTG]
1839
1915
+
Ile
GAT
[ENA]
¡û
>W1810180828
PJTH01000146
Bacillota
Clostridium perfringens Warren [PJTH]
1237
1313
+
Ile
GAT
[ENA]
¡û
>W1810180830
PJTH01000149
Bacillota
Clostridium perfringens Warren [PJTH]
208
284
+
Ile
GAT
[ENA]
¡û
>W1810180835
PJTH01000182
Bacillota
Clostridium perfringens Warren [PJTH]
405
329
-
Ile
GAT
[ENA]
¡û
>W1810180900
PJTI01000061
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
1479
1555
+
Ile
GAT
[ENA]
¡û
>W1810181031
PJTK01000016
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
2900
2824
-
Ile
GAT
[ENA]
¡û
>W1810181133
PJTL01000064
Bacillota
Clostridium perfringens TAM-NE38 [PJTL]
563
487
-
Ile
GAT
[ENA]
¡û
>W1810181227
PJTM01000043
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
188
112
-
Ile
GAT
[ENA]
¡û
>W1810181229
PJTM01000049
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
629
705
+
Ile
GAT
[ENA]
¡û
>W1810803496
QRQT01000041
Bacillota
Clostridium perfringens AF30-3 [QRQT]
1992
2068
+
Ile
GAT
[ENA]
¡û
>W1510755225
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1455232
1455156
-
Ile
GAT
[ENA]
¡û
>W1511472110
JVYV01000031
Bacillota
Clostridium perfringens 1207_CPER [JVYV]
160
84
-
Ile
GAT
[ENA]
¡û
>C161021541
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
3104383
3104307
-
Ile
GAT
-
¡û
>C161021577
CP009557
Bacillota
Clostridium perfringens FORC_003 [CP009557]
2872020
2871944
-
Ile
GAT
-
¡û
>C161030442
CP010993
Bacillota
Clostridium perfringens JP55 [CP010993]
3111587
3111511
-
Ile
GAT
-
¡û
>C161030478
CP010993
Bacillota
Clostridium perfringens JP55 [CP010993]
2868286
2868210
-
Ile
GAT
-
¡û
>C161030536
CP010994
Bacillota
Clostridium perfringens JP838 [CP010994]
3284106
3284030
-
Ile
GAT
[Ensembl]
¡û
>C161030570
CP010994
Bacillota
Clostridium perfringens JP838 [CP010994]
3043631
3043555
-
Ile
GAT
[Ensembl]
¡û
>W121001782
ADLP01000032
Bacillota
Clostridium perfringens WAL-14572 [ADLP]
573
497
-
Ile
GAT
[ENA]
¡û
>W1610100209
CYYX01000048
Bacillota
Clostridium perfringens [CYYX]
227
151
-
Ile
GAT
[ENA]
¡û
>W1710102964
CYYX01000048
Bacillota
Clostridium perfringens [CYYX]
227
151
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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