This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273219 (97 seq.)
>W1710785437
LJHW01000002
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
189665
189589
-
Arg
TCT
[ENA]
¡û
>W1710785744
LJID01000012
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
52312
52388
+
Arg
TCT
[ENA]
¡û
>W1710860003
LMCN01000014
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
168279
168203
-
Arg
TCT
[ENA]
¡û
>W1710860740
LMDC01000028
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
681424
681500
+
Arg
TCT
[ENA]
¡û
>W1710861135
LMDK01000012
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
356253
356177
-
Arg
TCT
[ENA]
¡û
>W1710861285
LMDM01000019
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
64039
64115
+
Arg
TCT
[ENA]
¡û
>W1710864104
LMFP01000028
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
756596
756520
-
Arg
TCT
[ENA]
¡û
>W1710866426
LMHL01000015
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
64040
64116
+
Arg
TCT
[ENA]
¡û
>W1710877839
LMQL01000010
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
418020
417944
-
Arg
TCT
[ENA]
¡û
>W1711386283
MEFD01000019
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
41160
41084
-
Arg
TCT
[ENA]
¡û
>W1711394945
MESO01000054
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
86639
86715
+
Arg
TCT
[ENA]
¡û
>W1711453673
MIYM01000007
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
261039
260963
-
Arg
TCT
[ENA]
¡û
>W1711502451
MKSS01000026
Betaproteobacteria
Hydrogenophaga sp. 70-12 [MKSS]
24494
24570
+
Arg
TCT
[ENA]
¡û
>W1711503055
MKTG01000097
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
50821
50897
+
Arg
TCT
[ENA]
¡û
>W1711793355
MWLO01000123
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
11495
11419
-
Arg
TCT
[ENA]
¡û
>W1712049937
NFUT01000002
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
811587
811511
-
Arg
TCT
[ENA]
¡û
>W1712102925
NIOE01000015
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
107977
108053
+
Arg
TCT
[ENA]
¡û
>W1712102961
NIOF01000002
Betaproteobacteria
Roseateles aquatilis [NIOF]
258082
258006
-
Arg
TCT
[ENA]
¡û
>W1712103003
NIOG01000001
Betaproteobacteria
Roseateles terrae [NIOG]
1243905
1243829
-
Arg
TCT
[ENA]
¡û
>C171060602
CP017311
Betaproteobacteria
Hydrogenophaga sp. PBC [CP017311]
2402316
2402392
+
Arg
TCT
-
¡û
>W131171385
ARGE01000026
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
64556
64632
+
Arg
TCT
[ENA]
¡û
>W131178113
ARLH01000091
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
111140
111064
-
Arg
TCT
[ENA]
¡û
>W131226933
AUET01000008
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
231836
231912
+
Arg
TCT
[ENA]
¡û
>W131236710
AUMO01000068
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
45283
45207
-
Arg
TCT
[ENA]
¡û
>W131237203
AUNN01000084
Betaproteobacteria
Pelomonas sp. JGI 001013-K11 [AUNN]
37662
37738
+
Arg
TCT
[ENA]
¡û
>WENV180731829
ODGW01019194
[ODGW] human metagenome; G_DNA_Supragingival plaque
481
555
+
Arg
TCT
[ENA]
¢þ
>WENV180836140
ODKE01048529
[ODKE] human metagenome; G_DNA_Supragingival plaque
197
123
-
Arg
TCT
[ENA]
¢þ
>WENV180934248
ODTR01066264
[ODTR] human metagenome; G_DNA_Supragingival plaque
181
255
+
Arg
TCT
[ENA]
¢þ
>WENV180938883
ODTX01008976
[ODTX] human metagenome; G_DNA_Supragingival plaque
203
129
-
Arg
TCT
[ENA]
¢þ
>WENV180981826
ODVE01069570
[ODVE] human metagenome; G_DNA_Supragingival plaque
432
506
+
Arg
TCT
[ENA]
¢þ
>WENV180983920
ODVF01061589
[ODVF] human metagenome; G_DNA_Supragingival plaque
205
131
-
Arg
TCT
[ENA]
¢þ
>WENV181049666
ODYD01001205
[ODYD] human metagenome; G_DNA_Supragingival plaque
9272
9198
-
Arg
TCT
[ENA]
¢þ
>WENV181070484
OEAE01002170
[OEAE] human metagenome; G_DNA_Supragingival plaque
4227
4153
-
Arg
TCT
[ENA]
¢þ
>WENV181077888
OEAP01213279
[OEAP] human metagenome; G_DNA_Supragingival plaque
38
112
+
Arg
TCT
[ENA]
¢þ
>WENV181167782
OEIU01074572
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
785
709
-
Arg
TCT
[ENA]
¢þ
>WENV181169439
OEIV010002479
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
78
2
-
Arg
TCT
[ENA]
¢þ
>WENV181181481
OEJU01078396
[OEJU] human metagenome; G_DNA_Supragingival plaque
56
130
+
Arg
TCT
[ENA]
¢þ
>WENV181223561
OFDC01033038
[OFDC] hot springs metagenome; Water
968
892
-
Arg
TCT
[ENA]
¢þ
>WENV181311367
OFJB01001195
[OFJB] sludge metagenome; sludge
10104
10028
-
Arg
TCT
[ENA]
¢þ
>WENV181364624
OFOZ01001121
[OFOZ] sediment metagenome; Lake sediment
439
363
-
Arg
TCT
[ENA]
¢þ
>WENV181401401
OFTX01000104
[OFTX] sludge metagenome; sludge
17592
17516
-
Arg
TCT
[ENA]
¢þ
>W141223623
BADL01000011
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
8527
8603
+
Arg
TCT
[ENA]
¡û
>W141260612
CCAE010000005
Betaproteobacteria
Hydrogenophaga intermedia [CCAE]
115196
115272
+
Arg
TCT
[ENA]
¡û
>WENV183724918
PJQE01100862
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
88
164
+
Arg
TCT
[ENA]
¢þ
>WENV183729506
PJTQ01055354
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
361
285
-
Arg
TCT
[ENA]
¢þ
>WENV183741124
PJUF01043505
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
253
329
+
Arg
TCT
[ENA]
¢þ
>WENV170010639
APMI01023364
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2908
2984
+
Arg
TCT
[ENA]
¢þ
>WENV170202012
CEPQ01101386
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
433
357
-
Arg
TCT
[ENA]
¢þ
>WENV170552091
CXWJ01038235
[CXWJ] wastewater metagenome; activated sludge
81
5
-
Arg
TCT
[ENA]
¢þ
>WENV170653558
JRYJ01005908
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
322
246
-
Arg
TCT
[ENA]
¢þ
>WENV170654502
JRYL01000132
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
8874
8950
+
Arg
TCT
[ENA]
¢þ
>WENV170661149
JXWU01114149
[JXWU] soil metagenome; rice field; organic control Plot
376
300
-
Arg
TCT
[ENA]
¢þ
>WENV170710466
LNFM01001822
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
38071
38147
+
Arg
TCT
[ENA]
¢þ
>WENV170973230
MTKY01021010
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
634
558
-
Arg
TCT
[ENA]
¢þ
>C181064536
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2903283
2903359
+
Arg
TCT
-
¡û
>W1910175576
BJCL01000001
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
616210
616286
+
Arg
TCT
[ENA]
¡û
>W1911398083
NWMV01000080
Betaproteobacteria
Macromonas nakdongensis BK-30 [NWMV]
8571
8495
-
Arg
TCT
[ENA]
¡û
>W1911502793
OEQA01000007
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
425419
425493
+
Arg
TCT
[ENA]
¡û
>W1911701430
QNUI01000025
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
25951
25875
-
Arg
TCT
[ENA]
¡û
>W1911702162
QOAZ01000001
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
99257
99333
+
Arg
TCT
[ENA]
¡û
>W1911740764
QUSW01000008
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
177408
177332
-
Arg
TCT
[ENA]
¡û
>W1911766085
QXDH01000003
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
560816
560892
+
Arg
TCT
[ENA]
¡û
>W1810081381
PEOG01000090
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
12586
12510
-
Arg
TCT
[ENA]
¡û
>W1810273282
PSNX01000010
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
162609
162533
-
Arg
TCT
[ENA]
¡û
>W1810273299
PSNY01000004
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
148591
148667
+
Arg
TCT
[ENA]
¡û
>W1810475749
QAJF01000651
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
223
299
+
Arg
TCT
[ENA]
¡û
>W1810666621
QJOU01000011
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
138765
138841
+
Arg
TCT
[ENA]
¡û
>W1810762729
QQAP01000001
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
623610
623686
+
Arg
TCT
[ENA]
¡û
>W1810884627
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
578848
578924
+
Arg
TCT
[ENA]
¡û
>W1810912328
QVLS01000001
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
256623
256547
-
Arg
TCT
[ENA]
¡û
>C151090634
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
157160
157086
-
Arg
TCT
-
¡û
>W1511433161
JUGZ01000027
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
87018
87094
+
Arg
TCT
[ENA]
¡û
>W1511433210
JUHA01000022
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
35995
36071
+
Arg
TCT
[ENA]
¡û
>W11187684
CAFG01000257
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
10258
10182
-
Arg
TCT
[ENA]
¡û
>C161036438
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
2536110
2536186
+
Arg
TCT
-
¡û
>C161060283
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
2561093
2561169
+
Arg
TCT
[Ensembl]
¡û
>W121070130
AJWL01000088
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
43308
43232
-
Arg
TCT
[ENA]
¡û
>W121127045
CAFG01000257
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
10258
10182
-
Arg
TCT
[ENA]
¡û
>W1610070241
BCTC01000020
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
19967
19891
-
Arg
TCT
[ENA]
¡û
>W1610070547
BCTI01000040
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
43303
43227
-
Arg
TCT
[ENA]
¡û
>W1610074120
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
254973
255049
+
Arg
TCT
[ENA]
¡û
>W1610076246
BCYP01000011
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
195195
195119
-
Arg
TCT
[ENA]
¡û
>W1610649243
LJHW01000002
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
189665
189589
-
Arg
TCT
[ENA]
¡û
>W1610649550
LJID01000012
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
52312
52388
+
Arg
TCT
[ENA]
¡û
>W1610722349
LMCN01000014
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
168279
168203
-
Arg
TCT
[ENA]
¡û
>W1610723086
LMDC01000028
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
681424
681500
+
Arg
TCT
[ENA]
¡û
>W1610723481
LMDK01000012
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
356253
356177
-
Arg
TCT
[ENA]
¡û
>W1610723631
LMDM01000019
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
64039
64115
+
Arg
TCT
[ENA]
¡û
>W1610726450
LMFP01000028
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
756596
756520
-
Arg
TCT
[ENA]
¡û
>W1610728772
LMHL01000015
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
64040
64116
+
Arg
TCT
[ENA]
¡û
>W1610740185
LMQL01000010
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
418020
417944
-
Arg
TCT
[ENA]
¡û
>W1710067614
BCTC01000020
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
19967
19891
-
Arg
TCT
[ENA]
¡û
>W1710067920
BCTI01000040
Betaproteobacteria
Hydrogenophaga intermedia NBRC 102510 [BCTI]
43303
43227
-
Arg
TCT
[ENA]
¡û
>W1710071238
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
254973
255049
+
Arg
TCT
[ENA]
¡û
>W1710074061
BCYP01000011
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
195195
195119
-
Arg
TCT
[ENA]
¡û
>W1710544468
FOAV01000005
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
290159
290083
-
Arg
TCT
[ENA]
¡û
>W1710547374
FOCW01000001
Betaproteobacteria
Brachymonas denitrificans DSM 15123 [FOCW]
1358766
1358690
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK