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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273229 (40 seq.)
>WENV180288132
OBIL01058816
[OBIL] metagenome; hydrothermal vent
116
191
+
Val
TAC
[ENA]
¢þ
>WENV180581898
OCML01020600
[OCML] metagenome; diffuse fluid
284
209
-
Val
TAC
[ENA]
¢þ
>WENV180582681
OCMR01043028
[OCMR] metagenome; diffuse fluid
44
119
+
Val
TAC
[ENA]
¢þ
>WENV181213107
OFBU01010176
[OFBU] metagenome; hydrothermal vent
727
802
+
Val
TAC
[ENA]
¢þ
>WENV181215769
OFCA01013884
[OFCA] metagenome; hydrothermal vent
624
549
-
Val
TAC
[ENA]
¢þ
>WENV183710815
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
306
381
+
Val
TAC
[ENA]
¢þ
>WENV183721138
PDWJ01056412
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
26
101
+
Val
TAC
[ENA]
¢þ
>WENV183721734
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1066
1141
+
Val
TAC
[ENA]
¢þ
>WENV183721738
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1446
1519
+
Val
TAC
[ENA]
¢þ
>C181196957
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598790
598715
-
Val
TAC
-
¡û
>C181196961
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598411
598336
-
Val
TAC
-
¡û
>C181197017
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
591189
591114
-
Val
TAC
-
¡û
>C181197021
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
590841
590766
-
Val
TAC
-
¡û
>C181197025
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
590481
590406
-
Val
TAC
-
¡û
>C191084513
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
553166
553091
-
Val
TAC
-
¡û
>C191084517
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552822
552747
-
Val
TAC
-
¡û
>C191084521
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552461
552386
-
Val
TAC
-
¡û
>W1911424168
NXFY01000005
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
150729
150804
+
Val
TAC
[ENA]
¡û
>W1911424181
NXFY01000022
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
48655
48580
-
Val
TAC
[ENA]
¡û
>W1911424204
NXFY01000113
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
2
77
+
Val
TAC
[ENA]
¡û
>W1911426249
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16360
16285
-
Val
TAC
[ENA]
¡û
>W1911426253
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16005
15930
-
Val
TAC
[ENA]
¡û
>W1911426267
NXIF01000017
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
12872
12947
+
Val
TAC
[ENA]
¡û
>W1911576163
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
73925
73850
-
Val
TAC
[ENA]
¡û
>W1911576167
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
73563
73488
-
Val
TAC
[ENA]
¡û
>W1911576293
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
470
395
-
Val
TAC
[ENA]
¡û
>W1911576297
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
126
51
-
Val
TAC
[ENA]
¡û
>W1911576309
PDJX01000020
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
155
230
+
Val
TAC
[ENA]
¡û
>W1911576332
PDJX01000236
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
2
77
+
Val
TAC
[ENA]
¡û
>W1911576496
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30892
30817
-
Val
TAC
[ENA]
¡û
>W1911576500
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30538
30463
-
Val
TAC
[ENA]
¡û
>W1911576597
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73503
73428
-
Val
TAC
[ENA]
¡û
>W1911576601
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73141
73066
-
Val
TAC
[ENA]
¡û
>W1911576633
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236191
236116
-
Val
TAC
[ENA]
¡û
>W1911576662
PDKG01000004
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
153
228
+
Val
TAC
[ENA]
¡û
>W1911576667
PDKG01000005
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
122
47
-
Val
TAC
[ENA]
¡û
>W1911576888
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
72096
72021
-
Val
TAC
[ENA]
¡û
>W1911576892
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
71717
71642
-
Val
TAC
[ENA]
¡û
>W1911576929
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
72129
72054
-
Val
TAC
[ENA]
¡û
>W1911576933
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
71750
71675
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK