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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273273 (22 seq.)
>W1712110576
NJIX01000004
Betaproteobacteria
Achromobacter sp. HZ34 [NJIX]
694012
694088
+
Gln
TTG
[ENA]
¡û
>W1712110606
NJIY01000003
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
694012
694088
+
Gln
TTG
[ENA]
¡û
>C171016578
CP012334
Betaproteobacteria
Bordetella sp. H567 [CP012334]
541812
541888
+
Gln
TTG
-
¡û
>C171115723
CP021108
Betaproteobacteria
Bordetella genomosp. 8 AU19157 [CP021108]
615836
615912
+
Gln
TTG
-
¡û
>C171115770
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
545133
545211
+
Gln
TTG
-
¡û
>C171115817
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
433321
433399
+
Gln
TTG
-
¡û
>WENV180000115
CZVZ01001032
[CZVZ] metagenome; unknown
294
370
+
Gln
TTG
[ENA]
¢þ
>WENV170554077
CXWK01045527
[CXWK] wastewater metagenome; activated sludge
1009
933
-
Gln
TTG
[ENA]
¢þ
>WENV170668717
LAHQ01021524
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
287
211
-
Gln
TTG
[ENA]
¢þ
>WENV170668945
LAHR01000208
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
285
361
+
Gln
TTG
[ENA]
¢þ
>W1910890586
NEVJ01000001
Betaproteobacteria
Bordetella genomosp. 9 9 AU21707 [NEVJ]
478780
478855
+
Gln
TTG
[ENA]
¡û
>W1910890745
NEVM01000001
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
564122
564197
+
Gln
TTG
[ENA]
¡û
>W1910891057
NEVS01000001
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
565572
565647
+
Gln
TTG
[ENA]
¡û
>W1911641126
PYAL01000003
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
612668
612743
+
Gln
TTG
[ENA]
¡û
>W1810005508
BFBP01000013
Betaproteobacteria
Azospira sp. I13 [BFBP]
215383
215459
+
Gln
TTG
[ENA]
¡û
>W11114400
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1851400
1851476
+
Gln
TTG
[ENA]
¡û
>W1511680892
LFHA01000002
Betaproteobacteria
Achromobacter xylosoxidans CF304 [LFHA]
268813
268737
-
Gln
TTG
[ENA]
¡û
>C121006929
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
1068032
1068108
+
Gln
TTG
[Ensembl]
¡û
>C161051077
CP013111
Betaproteobacteria
Bordetella sp. N [CP013111]
5944861
5944937
+
Gln
TTG
[Ensembl]
¡û
>C161094149
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
613140
613216
+
Gln
TTG
-
¡û
>C161094196
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
598577
598653
+
Gln
TTG
[Ensembl]
¡û
>C161094243
CP016172
Betaproteobacteria
Bordetella flabilis AU10664 [CP016172]
629844
629920
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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