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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273277 (102 seq.)
>W1711107843
LTTE01000101
Bacteroidota
Prevotella sp. HMSC077E08 [LTTE]
211
285
+
Ile
GAT
[ENA]
¡û
>W1711108736
LTUA01000002
Bacteroidota
Prevotella sp. HMSC069G02 [LTUA]
1024
950
-
Ile
GAT
[ENA]
¡û
>WENV180007506
FLSA01048573
[FLSA] metagenome; saliva
211
285
+
Ile
GAT
[ENA]
¢þ
>WENV180334925
OBLF01089042
[OBLF] metagenome; feces
283
209
-
Ile
GAT
[ENA]
¢þ
>WENV180341877
OBLI01257900
[OBLI] pig gut metagenome; faeces
206
280
+
Ile
GAT
[ENA]
¢þ
>WENV180661325
OCVV011006547
[OCVV] gut metagenome; gut
136
210
+
Ile
GAT
[ENA]
¢þ
>WENV180661327
OCVV011006547
[OCVV] gut metagenome; gut
136
210
+
Ile
GAT
[ENA]
¢þ
>WENV180718215
ODGF01002314
[ODGF] human metagenome; G_DNA_Throat
296
222
-
Ile
GAT
[ENA]
¢þ
>WENV180721586
ODGL01002562
[ODGL] human metagenome; G_DNA_Subgingival plaque
346
420
+
Ile
GAT
[ENA]
¢þ
>WENV180728774
ODGU01093273
[ODGU] human metagenome; G_DNA_Supragingival plaque
302
376
+
Ile
GAT
[ENA]
¢þ
>WENV180734489
ODGZ01010312
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2488
2414
-
Ile
GAT
[ENA]
¢þ
>WENV180751152
ODHS01023425
[ODHS] human metagenome; G_DNA_Supragingival plaque
346
420
+
Ile
GAT
[ENA]
¢þ
>WENV180788466
ODIS01065556
[ODIS] human metagenome; G_DNA_Supragingival plaque
307
381
+
Ile
GAT
[ENA]
¢þ
>WENV180797703
ODJB01105160
[ODJB] human metagenome; G_DNA_Supragingival plaque
291
217
-
Ile
GAT
[ENA]
¢þ
>WENV180797846
ODJB01140970
[ODJB] human metagenome; G_DNA_Supragingival plaque
283
209
-
Ile
GAT
[ENA]
¢þ
>WENV180810499
ODJK01351833
[ODJK] human metagenome; G_DNA_Subgingival plaque
76
2
-
Ile
GAT
[ENA]
¢þ
>WENV180814593
ODJO01026090
[ODJO] human metagenome; G_DNA_Supragingival plaque
327
401
+
Ile
GAT
[ENA]
¢þ
>WENV180823548
ODJW01054230
[ODJW] human metagenome; G_DNA_Supragingival plaque
203
129
-
Ile
GAT
[ENA]
¢þ
>WENV180844249
ODKN01062972
[ODKN] human metagenome; G_DNA_Supragingival plaque
1
75
+
Ile
GAT
[ENA]
¢þ
>WENV180845074
ODKR01008295
[ODKR] human metagenome; G_DNA_Posterior fornix
205
131
-
Ile
GAT
[ENA]
¢þ
>WENV180846628
ODKT01016822
[ODKT] human metagenome; G_DNA_Supragingival plaque
2312
2238
-
Ile
GAT
[ENA]
¢þ
>WENV180860139
ODLD01023713
[ODLD] human metagenome; G_DNA_Supragingival plaque
928
854
-
Ile
GAT
[ENA]
¢þ
>WENV180889863
ODMN01196841
[ODMN] human metagenome; G_DNA_Supragingival plaque
79
5
-
Ile
GAT
[ENA]
¢þ
>WENV180905792
ODPF01109513
[ODPF] human metagenome; G_DNA_Stool
140
66
-
Ile
GAT
[ENA]
¢þ
>WENV180923121
ODTJ01047837
[ODTJ] human metagenome; G_DNA_Supragingival plaque
556
482
-
Ile
GAT
[ENA]
¢þ
>WENV180924951
ODTK01026556
[ODTK] human metagenome; G_DNA_Supragingival plaque
944
870
-
Ile
GAT
[ENA]
¢þ
>WENV180945511
ODUC01192703
[ODUC] human metagenome; G_DNA_Supragingival plaque
279
205
-
Ile
GAT
[ENA]
¢þ
>WENV180951951
ODUH01082840
[ODUH] human metagenome; G_DNA_Subgingival plaque
220
146
-
Ile
GAT
[ENA]
¢þ
>WENV180976019
ODUY01038771
[ODUY] human metagenome; G_DNA_Supragingival plaque
341
415
+
Ile
GAT
[ENA]
¢þ
>WENV180976060
ODUY01042018
[ODUY] human metagenome; G_DNA_Supragingival plaque
311
385
+
Ile
GAT
[ENA]
¢þ
>WENV180976443
ODUY01112731
[ODUY] human metagenome; G_DNA_Supragingival plaque
283
209
-
Ile
GAT
[ENA]
¢þ
>WENV180999817
ODVT01074359
[ODVT] human metagenome; G_DNA_Buccal mucosa
274
200
-
Ile
GAT
[ENA]
¢þ
>WENV181020191
ODWU01069795
[ODWU] human metagenome; G_DNA_Supragingival plaque
203
129
-
Ile
GAT
[ENA]
¢þ
>WENV181029961
ODXF01013609
[ODXF] human metagenome; G_DNA_Supragingival plaque
938
864
-
Ile
GAT
[ENA]
¢þ
>WENV181064422
ODYP01029137
[ODYP] human metagenome; G_DNA_Supragingival plaque
1164
1090
-
Ile
GAT
[ENA]
¢þ
>WENV181064430
ODYP01029522
[ODYP] human metagenome; G_DNA_Supragingival plaque
348
422
+
Ile
GAT
[ENA]
¢þ
>WENV181077705
OEAP01113672
[OEAP] human metagenome; G_DNA_Supragingival plaque
305
379
+
Ile
GAT
[ENA]
¢þ
>WENV181080565
OEAS01057986
[OEAS] human metagenome; G_DNA_Supragingival plaque
944
870
-
Ile
GAT
[ENA]
¢þ
>WENV181081240
OEAS01156721
[OEAS] human metagenome; G_DNA_Supragingival plaque
275
201
-
Ile
GAT
[ENA]
¢þ
>WENV181081291
OEAS01171811
[OEAS] human metagenome; G_DNA_Supragingival plaque
1
75
+
Ile
GAT
[ENA]
¢þ
>WENV181091424
OEBC01032358
[OEBC] human metagenome; G_DNA_Supragingival plaque
998
924
-
Ile
GAT
[ENA]
¢þ
>WENV181092002
OEBC01174678
[OEBC] human metagenome; G_DNA_Supragingival plaque
276
350
+
Ile
GAT
[ENA]
¢þ
>WENV181107744
OEEI01020221
[OEEI] human metagenome; G_DNA_Supragingival plaque
327
401
+
Ile
GAT
[ENA]
¢þ
>WENV181136498
OEGI01010714
[OEGI] human metagenome; G_DNA_Supragingival plaque
1311
1237
-
Ile
GAT
[ENA]
¢þ
>WENV181152922
OEIA01010329
[OEIA] human metagenome; G_DNA_Supragingival plaque
2482
2408
-
Ile
GAT
[ENA]
¢þ
>WENV181178158
OEJS01072164
[OEJS] human metagenome; G_DNA_Supragingival plaque
79
5
-
Ile
GAT
[ENA]
¢þ
>WENV181182944
OEJV01086262
[OEJV] human metagenome; G_DNA_Supragingival plaque
346
420
+
Ile
GAT
[ENA]
¢þ
>WENV181462839
OGEO01000032
[OGEO] metagenome; Human gut stool
162067
161993
-
Ile
GAT
[ENA]
¢þ
>WENV181502464
OGGI01037667
[OGGI] metagenome; Human gut stool
813
739
-
Ile
GAT
[ENA]
¢þ
>WENV181511832
OGGS01010462
[OGGS] metagenome; Human gut stool
2309
2235
-
Ile
GAT
[ENA]
¢þ
>WENV181555471
OGIT01004701
[OGIT] metagenome; Human gut stool
2174
2100
-
Ile
GAT
[ENA]
¢þ
>WENV181568970
OGJK01015751
[OGJK] metagenome; Human gut stool
2308
2234
-
Ile
GAT
[ENA]
¢þ
>WENV181581740
OGKA01058883
[OGKA] metagenome; Human gut stool
213
287
+
Ile
GAT
[ENA]
¢þ
>WENV181882106
OGXH01011671
[OGXH] human gut metagenome; faeces
990
1064
+
Ile
GAT
[ENA]
¢þ
>WENV182140617
OHKQ01036962
[OHKQ] human gut metagenome; feces
331
405
+
Ile
GAT
[ENA]
¢þ
>W141225060
BAIX01000079
Bacteroidota
Hoylesella enoeca JCM 12259 [BAIX]
1713
1787
+
Ile
GAT
[ENA]
¡û
>W141225466
BAJG01000068
Bacteroidota
Prevotella denticola JCM 13449 [BAJG]
1076
1002
-
Ile
GAT
[ENA]
¡û
>W141226342
BAJZ01000125
Bacteroidota
Segatella maculosa JCM 15638 [BAJZ]
313
387
+
Ile
GAT
[ENA]
¡û
>W141226344
BAJZ01000128
Bacteroidota
Segatella maculosa JCM 15638 [BAJZ]
228
302
+
Ile
GAT
[ENA]
¡û
>WENV182596108
OJIY01001145
[OJIY] metagenome; faeces
1973
2047
+
Ile
GAT
[ENA]
¢þ
>WENV182631013
OJKW01003643
[OJKW] metagenome; faeces
2404
2330
-
Ile
GAT
[ENA]
¢þ
>WENV182702209
OJOQ01005614
[OJOQ] human gut metagenome; stool sample
1524
1450
-
Ile
GAT
[ENA]
¢þ
>WENV182732698
OJQB01011289
[OJQB] human gut metagenome; stool sample
1045
971
-
Ile
GAT
[ENA]
¢þ
>W141276453
JADU01000053
Bacteroidota
Hallella seregens ATCC 51272 [JADU]
1883
1957
+
Ile
GAT
[ENA]
¡û
>WENV183027006
OLFU01012866
[OLFU] human gut metagenome; faeces
207
281
+
Ile
GAT
[ENA]
¢þ
>WENV183033871
OLFY01014589
[OLFY] human gut metagenome; faeces
2334
2260
-
Ile
GAT
[ENA]
¢þ
>WENV183106530
OLNL01011206
[OLNL] human gut metagenome; faeces
2355
2281
-
Ile
GAT
[ENA]
¢þ
>WENV183172455
OLPC01012570
[OLPC] human gut metagenome; faeces
189
263
+
Ile
GAT
[ENA]
¢þ
>WENV183194186
OLPS01034272
[OLPS] human gut metagenome; faeces
191
265
+
Ile
GAT
[ENA]
¢þ
>WENV183316200
OLVS01010552
[OLVS] human gut metagenome; feces
207
281
+
Ile
GAT
[ENA]
¢þ
>WENV183342410
OLWN01013938
[OLWN] human gut metagenome; feces
207
281
+
Ile
GAT
[ENA]
¢þ
>WENV183354008
OLXB01006808
[OLXB] human gut metagenome; feces
2251
2177
-
Ile
GAT
[ENA]
¢þ
>WENV183510269
OMHN01001380
[OMHN] human oral metagenome; human oral
1206
1132
-
Ile
GAT
[ENA]
¢þ
>WENV170669681
LAHS01001246
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
827
753
-
Ile
GAT
[ENA]
¢þ
>WENV170669683
LAHS01001249
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
79
5
-
Ile
GAT
[ENA]
¢þ
>C191084062
CP032056
Bacteroidota
Prevotella denticola KCOM 1525 [CP032056, CP032057]
840462
840388
-
Ile
GAT
-
¡û
>C191084079
CP032057
Bacteroidota
Prevotella denticola KCOM 1525 [CP032056, CP032057]
1023468
1023542
+
Ile
GAT
-
¡û
>C191209854
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
1247267
1247341
+
Ile
GAT
-
¡û
>C191209876
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
3152951
3153025
+
Ile
GAT
-
¡û
>C191209881
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
2893173
2893099
-
Ile
GAT
-
¡û
>C191209883
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
2484250
2484176
-
Ile
GAT
-
¡û
>C191209900
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
443948
443874
-
Ile
GAT
-
¡û
>W09134786
ACUZ01000110
Bacteroidota
Segatella oris F0302 [ACUZ]
2412
2486
+
Ile
GAT
[ENA]
¡û
>C151004201
CP003368
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
238282
238356
+
Ile
GAT
[Ensembl]
¡û
>C151004212
CP003368
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
580673
580747
+
Ile
GAT
[Ensembl]
¡û
>C151004223
CP003368
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
1374272
1374198
-
Ile
GAT
[Ensembl]
¡û
>C151004228
CP003368
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
918924
918850
-
Ile
GAT
[Ensembl]
¡û
>C151004245
CP003369
Bacteroidota
Prevotella dentalis DSM 3688 [CP003368, CP003369]
949408
949482
+
Ile
GAT
[Ensembl]
¡û
>ENV09002395
ADGC01001018
Wallaby gut metagenome MeugComb_C1
517
443
-
Ile
GAT
[ENA]
¡û
>W10111885
ADDV01000091
Bacteroidota
Segatella oris C735 [ADDV]
3796
3722
-
Ile
GAT
[ENA]
¡û
>W11114862
ADDV01000091
Bacteroidota
Segatella oris C735 [ADDV]
3796
3722
-
Ile
GAT
[ENA]
¡û
>C11117006
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
2482473
2482547
+
Ile
GAT
[Ensembl]
¡û
>C11117026
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
318952
318878
-
Ile
GAT
[Ensembl]
¡û
>W11151914
AEXO01000110
Bacteroidota
Prevotella denticola CRIS 18C-A [AEXO]
457
531
+
Ile
GAT
[ENA]
¡û
>W11170834
AFPW01000068
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
235
309
+
Ile
GAT
[ENA]
¡û
>W11170836
AFPW01000070
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
389
315
-
Ile
GAT
[ENA]
¡û
>C161052724
CP013195
Bacteroidota
Hoylesella enoeca F0113 [CP013195]
382904
382978
+
Ile
GAT
[Ensembl]
¡û
>C161052740
CP013195
Bacteroidota
Hoylesella enoeca F0113 [CP013195]
2508798
2508724
-
Ile
GAT
[Ensembl]
¡û
>C161052742
CP013195
Bacteroidota
Hoylesella enoeca F0113 [CP013195]
2475088
2475014
-
Ile
GAT
[Ensembl]
¡û
>W121017357
AGRS01000022
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
369
443
+
Ile
GAT
[ENA]
¡û
>W121017370
AGRS01000055
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
87
13
-
Ile
GAT
[ENA]
¡û
>W121017408
AGRS01000065
Bacteroidota
Prevotella dentalis DSM 3688 [AGRS]
189272
189198
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK