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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273289 (90 seq.)
>W1710867082
LMHZ01000013
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
61556
61632
+
Met
CAT
[ENA]
¡û
>W1710875450
LMOJ01000025
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
656904
656828
-
Met
CAT
[ENA]
¡û
>W1710875451
LMOJ01000025
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
656756
656680
-
Met
CAT
[ENA]
¡û
>W1711394672
MEQN01000087
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_58_11 [MEQN]
4463
4539
+
Met
CAT
[ENA]
¡û
>W1711413740
MGWS01000033
Betaproteobacteria
Gallionellales bacterium GWA2_60_18 [MGWS]
69825
69749
-
Met
CAT
[ENA]
¡û
>W1711582078
MNUX01000095
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
77
1
-
Met
CAT
[ENA]
¡û
>W1711583483
MNXH01000032
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_948 [MNXH]
1668
1592
-
Met
CAT
[ENA]
¡û
>W131219579
ATYR01000018
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
97208
97132
-
Met
CAT
[ENA]
¡û
>W131219580
ATYR01000018
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
97058
96982
-
Met
CAT
[ENA]
¡û
>WENV180017421
FSWY01000046
[FSWY] metagenome; soil
351
275
-
Met
CAT
[ENA]
¢þ
>WENV180018313
FSYV01000526
[FSYV] metagenome; soil
31076
31152
+
Met
CAT
[ENA]
¢þ
>WENV180022331
FTFY01000950
[FTFY] metagenome; soil
11125
11201
+
Met
CAT
[ENA]
¢þ
>WENV180026707
FTIU01033320
[FTIU] metagenome; soil
291
367
+
Met
CAT
[ENA]
¢þ
>WENV180032847
FTKD01002117
[FTKD] metagenome; soil
12709
12633
-
Met
CAT
[ENA]
¢þ
>WENV180035752
FTLB01003649
[FTLB] metagenome; soil
2
78
+
Met
CAT
[ENA]
¢þ
>WENV180035768
FTLB01005477
[FTLB] metagenome; soil
100937
100861
-
Met
CAT
[ENA]
¢þ
>WENV180041390
LLBZ010117231
[LLBZ] soil metagenome; soil from tomato rhizosphere
2153
2229
+
Met
CAT
[ENA]
¢þ
>WENV180248431
OBEQ010108141
[OBEQ] groundwater metagenome; groundwater
710
786
+
Met
CAT
[ENA]
¢þ
>WENV180255388
OBEQ010720570
[OBEQ] groundwater metagenome; groundwater
827
751
-
Met
CAT
[ENA]
¢þ
>WENV180260750
OBEQ011227970
[OBEQ] groundwater metagenome; groundwater
4
80
+
Met
CAT
[ENA]
¢þ
>WENV180260871
OBEQ011240151
[OBEQ] groundwater metagenome; groundwater
596
672
+
Met
CAT
[ENA]
¢þ
>WENV180292960
OBIV01730757
[OBIV] soil metagenome; Clay
117
193
+
Met
CAT
[ENA]
¢þ
>WENV180311292
OBJT01207515
[OBJT] soil metagenome; soil
153
229
+
Met
CAT
[ENA]
¢þ
>WENV180350928
OBLQ010016544
[OBLQ] soil metagenome; soil
1750
1826
+
Met
CAT
[ENA]
¢þ
>W141258897
CBXX010000007
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
79806
79882
+
Met
CAT
[ENA]
¡û
>WENV183695560
ORMF012409418
[ORMF] groundwater metagenome; groundwater
321
397
+
Met
CAT
[ENA]
¢þ
>WENV183697739
OUNK010050420
[OUNK] metagenome; soil
396
472
+
Met
CAT
[ENA]
¢þ
>WENV183726689
PJTO01000068
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
121921
121845
-
Met
CAT
[ENA]
¢þ
>WENV183726690
PJTO01000068
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
121771
121695
-
Met
CAT
[ENA]
¢þ
>WENV183727918
PJTP01005460
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
977
1053
+
Met
CAT
[ENA]
¢þ
>WENV183727919
PJTP01005460
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1127
1203
+
Met
CAT
[ENA]
¢þ
>WENV183728504
PJTQ01000090
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
121921
121845
-
Met
CAT
[ENA]
¢þ
>WENV183728505
PJTQ01000090
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
121771
121695
-
Met
CAT
[ENA]
¢þ
>WENV183730099
PJTR01000664
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1132
1208
+
Met
CAT
[ENA]
¢þ
>WENV183733745
PJTY01020373
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
370
294
-
Met
CAT
[ENA]
¢þ
>WENV183735931
PJUB01012834
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
128
204
+
Met
CAT
[ENA]
¢þ
>WENV183737269
PJUD01002342
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3758
3682
-
Met
CAT
[ENA]
¢þ
>WENV183737270
PJUD01002342
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3608
3532
-
Met
CAT
[ENA]
¢þ
>WENV183739181
PJUE01002721
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1657
1581
-
Met
CAT
[ENA]
¢þ
>WENV183740427
PJUF01002019
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6290
6214
-
Met
CAT
[ENA]
¢þ
>WENV183740428
PJUF01002019
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6140
6064
-
Met
CAT
[ENA]
¢þ
>WENV183744213
PJUK01002131
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
2282
2206
-
Met
CAT
[ENA]
¢þ
>WENV170558014
CXWL01046314
[CXWL] groundwater metagenome; biofilm material
65836
65760
-
Met
CAT
[ENA]
¢þ
>WENV170558879
CXWL01097677
[CXWL] groundwater metagenome; biofilm material
3599
3675
+
Met
CAT
[ENA]
¢þ
>WENV170559256
CXWL01116217
[CXWL] groundwater metagenome; biofilm material
2817
2741
-
Met
CAT
[ENA]
¢þ
>WENV170621750
FUWD013071632
[FUWD] metagenome; unknown
98
22
-
Met
CAT
[ENA]
¢þ
>WENV170629937
FUWD013287319
[FUWD] metagenome; unknown
98
22
-
Met
CAT
[ENA]
¢þ
>WENV170711066
LNFM01003428
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2909
2985
+
Met
CAT
[ENA]
¢þ
>WENV170712500
LNFM01014122
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4305
4229
-
Met
CAT
[ENA]
¢þ
>WENV170961334
MLJW01000008
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
335081
335005
-
Met
CAT
[ENA]
¢þ
>WENV170961450
MLJW01000047
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
36570
36646
+
Met
CAT
[ENA]
¢þ
>WENV170961486
MLJW01000077
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
91554
91630
+
Met
CAT
[ENA]
¢þ
>C181071842
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
4409256
4409332
+
Met
CAT
-
¡û
>C191125967
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
3471839
3471763
-
Met
CAT
-
¡û
>C191138928
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
3679243
3679319
+
Met
CAT
-
¡û
>C191173959
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
3868022
3868098
+
Met
CAT
-
¡û
>W09134964
ACVF01000006
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
101694
101770
+
Met
CAT
[ENA]
¡û
>W1910548783
FZOT01000015
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
58561
58485
-
Met
CAT
[ENA]
¡û
>W1910698926
MEQR01000069
Betaproteobacteria
Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 [MEQR]
4773
4849
+
Met
CAT
[ENA]
¡û
>W1910700082
MESE01000057
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
136745
136821
+
Met
CAT
[ENA]
¡û
>W1911572357
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1284270
1284346
+
Met
CAT
[ENA]
¡û
>W1911647623
QAJP01000010
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
79841
79917
+
Met
CAT
[ENA]
¡û
>W1911802741
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
3089350
3089426
+
Met
CAT
[ENA]
¡û
>W1911802787
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
2851038
2851114
+
Met
CAT
[ENA]
¡û
>W1810399995
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
2496207
2496283
+
Met
CAT
[ENA]
¡û
>W1810659456
QJKB01000004
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
46498
46422
-
Met
CAT
[ENA]
¡û
>C151082392
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
1528285
1528209
-
Met
CAT
-
¡û
>ENV09004055
ADIG01001566
Groundwater metagenome 4000601.lucy.pga.C1
370
294
-
Met
CAT
[ENA]
¡û
>C10111854
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
464460
464536
+
Met
CAT
[Ensembl]
¡û
>C11105070
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4165411
4165487
+
Met
CAT
[Ensembl]
¡û
>W1511657395
LELH02000001
Betaproteobacteria
Massilia sp. WF1 [LELH]
441917
441841
-
Met
CAT
[ENA]
¡û
>W1511683839
LFLT01000026
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
62994
63070
+
Met
CAT
[ENA]
¡û
>C161043179
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
5461201
5461277
+
Met
CAT
-
¡û
>C161053591
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4600118
4600194
+
Met
CAT
[Ensembl]
¡û
>C161053646
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
3668650
3668726
+
Met
CAT
-
¡û
>C161053690
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4554384
4554460
+
Met
CAT
[Ensembl]
¡û
>C161053742
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3653872
3653948
+
Met
CAT
[Ensembl]
¡û
>C161053790
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4579952
4580028
+
Met
CAT
[Ensembl]
¡û
>W121061950
AJHH01000014
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
641
717
+
Met
CAT
[ENA]
¡û
>W121085183
AKJA01000129
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
69221
69297
+
Met
CAT
[ENA]
¡û
>W1610070449
BCTG01000049
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
13332
13408
+
Met
CAT
[ENA]
¡û
>W1610729428
LMHZ01000013
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
61556
61632
+
Met
CAT
[ENA]
¡û
>W1610737796
LMOJ01000025
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
656904
656828
-
Met
CAT
[ENA]
¡û
>W1610737797
LMOJ01000025
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
656756
656680
-
Met
CAT
[ENA]
¡û
>W1710067822
BCTG01000049
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
13332
13408
+
Met
CAT
[ENA]
¡û
>W1710530356
FNOR01000005
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
170289
170213
-
Met
CAT
[ENA]
¡û
>W1710557537
FOLC01000010
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
93712
93636
-
Met
CAT
[ENA]
¡û
>W1710557612
FOLD01000037
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
4420
4344
-
Met
CAT
[ENA]
¡û
>W1710557613
FOLD01000037
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
4283
4207
-
Met
CAT
[ENA]
¡û
>W1710564226
FOQI01000013
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
119164
119240
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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