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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273300 (87 seq.)
>W1711114483
LTZG01000021
Bacillota
Planococcus maritimus [LTZG]
356002
355926
-
Met
CAT
[ENA]
¡û
>W1711114496
LTZG01000041
Bacillota
Planococcus maritimus [LTZG]
720
796
+
Met
CAT
[ENA]
¡û
>W1711114513
LTZG01000052
Bacillota
Planococcus maritimus [LTZG]
793
717
-
Met
CAT
[ENA]
¡û
>W1711330202
MBMU01000018
Bacillota
Planococcus faecalis [MBMU]
4732
4808
+
Met
CAT
[ENA]
¡û
>W1711330214
MBMU01000020
Bacillota
Planococcus faecalis [MBMU]
1623
1699
+
Met
CAT
[ENA]
¡û
>W1711330250
MBMU01000059
Bacillota
Planococcus faecalis [MBMU]
50805
50729
-
Met
CAT
[ENA]
¡û
>W1711434661
MINM01000011
Bacillota
Planococcus maritimus [MINM]
1531
1607
+
Met
CAT
[ENA]
¡û
>W1711434686
MINM01000038
Bacillota
Planococcus maritimus [MINM]
174041
173965
-
Met
CAT
[ENA]
¡û
>W1711434702
MINM01000039
Bacillota
Planococcus maritimus [MINM]
92468
92544
+
Met
CAT
[ENA]
¡û
>W131055398
ANBV01000002
Bacillota
Planococcus halocryophilus Or1 [ANBV]
1612
1688
+
Met
CAT
[ENA]
¡û
>W131055427
ANBV01000013
Bacillota
Planococcus halocryophilus Or1 [ANBV]
120604
120528
-
Met
CAT
[ENA]
¡û
>W131055448
ANBV01000029
Bacillota
Planococcus halocryophilus Or1 [ANBV]
236592
236668
+
Met
CAT
[ENA]
¡û
>C171070678
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
462742
462818
+
Met
CAT
-
¡û
>C171070684
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
659371
659447
+
Met
CAT
-
¡û
>C171092778
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
533993
534069
+
Met
CAT
-
¡û
>C171092791
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
1029659
1029735
+
Met
CAT
-
¡û
>C171092817
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
1215070
1215146
+
Met
CAT
-
¡û
>C171097624
CP019640
Bacillota
Planococcus lenghuensis Y42 [CP019640]
512454
512530
+
Met
CAT
-
¡û
>C171097636
CP019640
Bacillota
Planococcus lenghuensis Y42 [CP019640]
984850
984926
+
Met
CAT
-
¡û
>C171097659
CP019640
Bacillota
Planococcus lenghuensis Y42 [CP019640]
1224464
1224540
+
Met
CAT
-
¡û
>WENV180101098
OAOU01000548
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
147
223
+
fMet
CAT
[ENA]
¢þ
>WENV180101121
OAOU01000887
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
4149
4073
-
fMet
CAT
[ENA]
¢þ
>WENV180101186
OAOU01004416
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
113
37
-
fMet
CAT
[ENA]
¢þ
>WENV180101416
OAOU01059279
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3
79
+
fMet
CAT
[ENA]
¢þ
>W141028984
ALEF01000033
Bacillota
Virgibacillus halodenitrificans 1806 [ALEF]
631
707
+
Met
CAT
[ENA]
¡û
>W141263838
CCDO010000002
Bacillota
Virgibacillus halodenitrificans [CCDO]
1524107
1524183
+
Met
CAT
[ENA]
¡û
>W141263895
CCDO010000007
Bacillota
Virgibacillus halodenitrificans [CCDO]
215199
215123
-
Met
CAT
[ENA]
¡û
>C191099012
CP033049
Bacillota
Virgibacillus halodenitrificans Bac324 [CP033049]
2620622
2620546
-
Met
CAT
-
¡û
>C191099018
CP033049
Bacillota
Virgibacillus halodenitrificans Bac324 [CP033049]
2392017
2391941
-
Met
CAT
-
¡û
>W1910373716
FUHR01000006
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
795431
795355
-
Met
CAT
[ENA]
¡û
>W1910373722
FUHR01000006
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
577651
577575
-
Met
CAT
[ENA]
¡û
>W1911652771
QBEW01000013
Bacillota
Planococcus citreus DSM 20549 [QBEW]
24905
24829
-
Met
CAT
[ENA]
¡û
>W1911652781
QBEW01000015
Bacillota
Planococcus citreus DSM 20549 [QBEW]
37582
37658
+
Met
CAT
[ENA]
¡û
>W1810057803
PDIZ01000001
Bacillota
Bacillus sp. es.036 [PDIZ]
3577480
3577404
-
Met
CAT
[ENA]
¡û
>W1810057814
PDIZ01000001
Bacillota
Bacillus sp. es.036 [PDIZ]
2030642
2030566
-
Met
CAT
[ENA]
¡û
>W1810057847
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
135957
136033
+
Met
CAT
[ENA]
¡û
>W1810057856
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
385474
385550
+
Met
CAT
[ENA]
¡û
>W1810392861
PYAT01000015
Bacillota
Planomicrobium soli CGMCC 1.12259 [PYAT]
63867
63943
+
Met
CAT
[ENA]
¡û
>W1810392874
PYAT01000027
Bacillota
Planomicrobium soli CGMCC 1.12259 [PYAT]
589
665
+
Met
CAT
[ENA]
¡û
>W1810392899
PYAT01000031
Bacillota
Planomicrobium soli CGMCC 1.12259 [PYAT]
1005
929
-
Met
CAT
[ENA]
¡û
>W1810698331
QLZQ01000003
Bacillota
Planococcus maitriensis S1 [QLZQ]
349425
349501
+
Met
CAT
[ENA]
¡û
>W1810698360
QLZQ01000008
Bacillota
Planococcus maitriensis S1 [QLZQ]
1072
1148
+
Met
CAT
[ENA]
¡û
>C151044618
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
423452
423528
+
Met
CAT
[Ensembl]
¡û
>C151044629
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
842061
842137
+
Met
CAT
[Ensembl]
¡û
>C151044657
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
1021130
1021206
+
Met
CAT
[Ensembl]
¡û
>W11142436
AEPB01000012
Bacillota
Planococcus donghaensis MPA1U2 [AEPB]
353
429
+
Met
CAT
[ENA]
¡û
>W11142452
AEPB01000030
Bacillota
Planococcus donghaensis MPA1U2 [AEPB]
100672
100596
-
Met
CAT
[ENA]
¡û
>W11142477
AEPB01000053
Bacillota
Planococcus donghaensis MPA1U2 [AEPB]
90201
90277
+
Met
CAT
[ENA]
¡û
>W1511657522
LELK01000001
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
42765
42841
+
Met
CAT
[ENA]
¡û
>W1511657544
LELK01000004
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
36755
36831
+
Met
CAT
[ENA]
¡û
>W1511657554
LELK01000005
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
1240
1316
+
Met
CAT
[ENA]
¡û
>W1511657589
LELK01000008
Bacillota
Alkalihalobacillus macyae DSM 16346 [LELK]
1760
1836
+
Met
CAT
[ENA]
¡û
>C161058649
CP013659
Bacillota
Planococcus rifietoensis M8 [CP013659]
230386
230462
+
Met
CAT
[Ensembl]
¡û
>C161058662
CP013659
Bacillota
Planococcus rifietoensis M8 [CP013659]
764862
764938
+
Met
CAT
[Ensembl]
¡û
>C161058689
CP013659
Bacillota
Planococcus rifietoensis M8 [CP013659]
959828
959904
+
Met
CAT
[Ensembl]
¡û
>C161058742
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
1231276
1231200
-
Met
CAT
[Ensembl]
¡û
>C161058755
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
739818
739742
-
Met
CAT
[Ensembl]
¡û
>C161058781
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
555720
555644
-
Met
CAT
[Ensembl]
¡û
>C161098284
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
3259690
3259614
-
Met
CAT
[Ensembl]
¡û
>C161098310
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
3060167
3060091
-
Met
CAT
[Ensembl]
¡û
>C161098340
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
20444
20368
-
Met
CAT
[Ensembl]
¡û
>C161098353
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
106248
106324
+
Met
CAT
[Ensembl]
¡û
>C161098379
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
306280
306356
+
Met
CAT
[Ensembl]
¡û
>C161098409
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
3066414
3066490
+
Met
CAT
[Ensembl]
¡û
>C161098439
CP016538
Bacillota
Planococcus maritimus DSM 17275 [CP016538]
713271
713347
+
Met
CAT
[Ensembl]
¡û
>C161098452
CP016538
Bacillota
Planococcus maritimus DSM 17275 [CP016538]
1202953
1203029
+
Met
CAT
[Ensembl]
¡û
>C161098478
CP016538
Bacillota
Planococcus maritimus DSM 17275 [CP016538]
1383183
1383259
+
Met
CAT
[Ensembl]
¡û
>C161098496
CP016539
Bacillota
Planococcus plakortidis DSM 23997 [CP016539]
161467
161543
+
Met
CAT
[Ensembl]
¡û
>C161098521
CP016539
Bacillota
Planococcus plakortidis DSM 23997 [CP016539]
353788
353864
+
Met
CAT
[Ensembl]
¡û
>C161098551
CP016539
Bacillota
Planococcus plakortidis DSM 23997 [CP016539]
2931204
2931280
+
Met
CAT
[Ensembl]
¡û
>C161098594
CP016540
Bacillota
Planococcus versutus L10.15 [CP016540]
575297
575221
-
Met
CAT
[Ensembl]
¡û
>C161098619
CP016540
Bacillota
Planococcus versutus L10.15 [CP016540]
393107
393031
-
Met
CAT
[Ensembl]
¡û
>C161098649
CP016543
Bacillota
Planococcus donghaensis DSM 22276 [CP016543]
2805906
2805830
-
Met
CAT
[Ensembl]
¡û
>C161098662
CP016543
Bacillota
Planococcus donghaensis DSM 22276 [CP016543]
2372401
2372325
-
Met
CAT
[Ensembl]
¡û
>C161098688
CP016543
Bacillota
Planococcus donghaensis DSM 22276 [CP016543]
2184175
2184099
-
Met
CAT
[Ensembl]
¡û
>W121071554
AJYB01000031
Bacillota
Planococcus antarcticus DSM 14505 [AJYB]
89
13
-
Met
CAT
[ENA]
¡û
>W121111260
ALJG01000109
Bacillota
Paenisporosarcina sp. TG20 TG20 [ALJG]
2297
2221
-
Met
CAT
[ENA]
¡û
>W121111275
ALJG01000200
Bacillota
Paenisporosarcina sp. TG20 TG20 [ALJG]
704
628
-
Met
CAT
[ENA]
¡û
>W121111298
ALJG01000329
Bacillota
Paenisporosarcina sp. TG20 TG20 [ALJG]
1448
1524
+
Met
CAT
[ENA]
¡û
>W1610043363
BAZS01000011
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
32
108
+
Met
CAT
[ENA]
¡û
>W1610043377
BAZS01000028
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
614
690
+
Met
CAT
[ENA]
¡û
>W1610521089
JHDT01000031
Bacillota
Planococcus versutus L10.15 [JHDT]
41094
41170
+
Met
CAT
[ENA]
¡û
>W1610927180
LTZG01000021
Bacillota
Planococcus maritimus [LTZG]
356002
355926
-
Met
CAT
[ENA]
¡û
>W1610927193
LTZG01000041
Bacillota
Planococcus maritimus [LTZG]
720
796
+
Met
CAT
[ENA]
¡û
>W1610927210
LTZG01000052
Bacillota
Planococcus maritimus [LTZG]
793
717
-
Met
CAT
[ENA]
¡û
>W1710040523
BAZS01000011
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
32
108
+
Met
CAT
[ENA]
¡û
>W1710040537
BAZS01000028
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
614
690
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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