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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273322 (27 seq.)
>W1711129643
LUUF01000015
Gammaproteobacteria
Methylomonas methanica [LUUF]
1982
2058
+
Ile
GAT
[ENA]
¡û
>W1711129709
LUUG01000113
Gammaproteobacteria
Methylomonas methanica [LUUG]
2026
2102
+
Ile
GAT
[ENA]
¡û
>W1711129730
LUUH01000043
Gammaproteobacteria
Methylomonas methanica [LUUH]
3890
3814
-
Ile
GAT
[ENA]
¡û
>W131155747
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
2840661
2840585
-
Ile
GAT
[ENA]
¡û
>W131155751
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
2292894
2292818
-
Ile
GAT
[ENA]
¡û
>W131155760
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1618007
1617931
-
Ile
GAT
[ENA]
¡û
>W141219919
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
2345458
2345534
+
Ile
GAT
[ENA]
¡û
>W141219923
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
2918967
2919043
+
Ile
GAT
[ENA]
¡û
>W141219949
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
359614
359538
-
Ile
GAT
[ENA]
¡û
>WENV170577658
FSSH01000444
[FSSH] freshwater metagenome; drinking water
1943
2019
+
Ile
GAT
[ENA]
¢þ
>C191105419
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1650535
1650611
+
Ile
GAT
-
¡û
>C191105429
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
4909272
4909196
-
Ile
GAT
-
¡û
>C191105433
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
4341780
4341704
-
Ile
GAT
-
¡û
>W141733726
JNLB01000037
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
3828
3752
-
Ile
GAT
[ENA]
¡û
>W1810154909
PIZT01000002
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
2031
2107
+
Ile
GAT
[ENA]
¡û
>C11114714
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
394190
394266
+
Ile
GAT
[Ensembl]
¡û
>C11114717
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
693236
693312
+
Ile
GAT
[Ensembl]
¡û
>C11114720
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
852026
852102
+
Ile
GAT
[Ensembl]
¡û
>W1511397857
JTDD01000014
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
3939
3863
-
Ile
GAT
[ENA]
¡û
>C161072429
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
2705650
2705726
+
Ile
GAT
[Ensembl]
¡û
>C161072434
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3064229
3064305
+
Ile
GAT
[Ensembl]
¡û
>C161072465
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
875369
875293
-
Ile
GAT
[Ensembl]
¡û
>W1610047648
BBDL01000196
Gammaproteobacteria
Methylogaea oryzae JCM 16910 [BBDL]
1813
1889
+
Ile
GAT
[ENA]
¡û
>W1610940716
LUUF01000015
Gammaproteobacteria
Methylomonas methanica [LUUF]
1982
2058
+
Ile
GAT
[ENA]
¡û
>W1610940782
LUUG01000113
Gammaproteobacteria
Methylomonas methanica [LUUG]
2026
2102
+
Ile
GAT
[ENA]
¡û
>W1610940803
LUUH01000043
Gammaproteobacteria
Methylomonas methanica [LUUH]
3890
3814
-
Ile
GAT
[ENA]
¡û
>W1710044222
BBDL01000196
Gammaproteobacteria
Methylogaea oryzae JCM 16910 [BBDL]
1813
1889
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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