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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273323 (41 seq.)
>W1711129655
LUUF01000056
Gammaproteobacteria
Methylomonas methanica [LUUF]
33179
33255
+
Val
GAC
[ENA]
¡û
>W1711129773
LUUI01000095
Gammaproteobacteria
Methylomonas lenta [LUUI]
171273
171197
-
Val
GAC
[ENA]
¡û
>W1711129830
LUUJ01000103
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
15092
15016
-
Val
GAC
[ENA]
¡û
>W1711129919
LUUL01000108
Gammaproteobacteria
Methylomonas koyamae [LUUL]
36338
36414
+
Val
GAC
[ENA]
¡û
>W1711767359
MUZR01000059
Gammaproteobacteria
Thioalkalivibrio halophilus [MUZR]
13306
13230
-
Val
GAC
[ENA]
¡û
>C171101073
CP019936
Gammaproteobacteria
Chromatiaceae bacterium 2141T.STBD.0c.01a [CP019936]
1863511
1863587
+
Val
GAC
-
¡û
>W131173964
ARIC01000057
Gammaproteobacteria
Thioalkalivibrio sp. ALgr3 [ARIC]
3391
3467
+
Val
GAC
[ENA]
¡û
>W131175097
ARIZ01000016
Gammaproteobacteria
Thioalkalivibrio sp. ALJ24 [ARIZ]
47077
47001
-
Val
GAC
[ENA]
¡û
>W131175371
ARJE01000022
Gammaproteobacteria
Thioalkalivibrio sp. AKL17 [ARJE]
59335
59259
-
Val
GAC
[ENA]
¡û
>W131177008
ARKM01000066
Gammaproteobacteria
Thioalkalivibrio sp. ALE23 [ARKM]
140170
140094
-
Val
GAC
[ENA]
¡û
>W131178263
ARLL01000043
Gammaproteobacteria
Thioalkalivibrio sp. ALE11 [ARLL]
1924
2000
+
Val
GAC
[ENA]
¡û
>W131178702
ARLT01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE10 [ARLT]
70295
70371
+
Val
GAC
[ENA]
¡û
>W131178726
ARLU01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALE20 [ARLU]
4495
4571
+
Val
GAC
[ENA]
¡û
>W131178878
ARLX01000024
Gammaproteobacteria
Thioalkalivibrio sp. ALE18 [ARLX]
70455
70531
+
Val
GAC
[ENA]
¡û
>W131180023
ARMV01000026
Gammaproteobacteria
Thioalkalivibrio sp. ALSr1 [ARMV]
171059
171135
+
Val
GAC
[ENA]
¡û
>W131214767
ATUL01000018
Gammaproteobacteria
Thioalkalivibrio sp. ALR17-21 [ATUL]
22737
22661
-
Val
GAC
[ENA]
¡û
>W131221232
AUAG01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALE19 [AUAG]
60373
60297
-
Val
GAC
[ENA]
¡û
>WENV181231745
OFEK01058529
[OFEK] activated sludge metagenome; Anaerobic digester
551
627
+
Val
GAC
[ENA]
¢þ
>WENV181415319
OGCL01008014
[OGCL] hot springs metagenome; Hot spring water
197
273
+
Val
GAC
[ENA]
¢þ
>WENV170683334
LFIK01009248
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7673
7749
+
Val
GAC
[ENA]
¢þ
>WENV170980436
MWSA01001274
[MWSA] mollusc metagenome; gill 40 cm from animal A
17
93
+
Val
GAC
[ENA]
¢þ
>WENV170980517
MWSB01002671
[MWSB] mollusc metagenome; gill 31 cm from animal A
17
93
+
Val
GAC
[ENA]
¢þ
>WENV170980583
MWSC01002908
[MWSC] mollusc metagenome; gill 70 cm from animal B
3005
3081
+
Val
GAC
[ENA]
¢þ
>WENV170980646
MWSD01000201
[MWSD] mollusc metagenome; gill 40 cm from animal B
5721
5797
+
Val
GAC
[ENA]
¢þ
>WENV170980707
MWSE01000092
[MWSE] mollusc metagenome; gill 28 cm from animal B
3943
3867
-
Val
GAC
[ENA]
¢þ
>C181088663
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
2030738
2030814
+
Val
GAC
-
¡û
>C191105441
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
3086258
3086182
-
Val
GAC
-
¡û
>W141733713
JNLB01000011
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
9404
9328
-
Val
GAC
[ENA]
¡û
>W1810154945
PIZT01000069
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
543352
543428
+
Val
GAC
[ENA]
¡û
>W1810676484
QKMA01000016
Gammaproteobacteria
Thioalkalivibrio sp. ALE21 [QKMA]
52108
52032
-
Val
GAC
[ENA]
¡û
>C11114754
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
1894633
1894557
-
Val
GAC
[Ensembl]
¡û
>W1511397875
JTDD01000048
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
55376
55300
-
Val
GAC
[ENA]
¡û
>C161072451
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
5119854
5119778
-
Val
GAC
[Ensembl]
¡û
>W1610046484
BBCK01000052
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
10033
10109
+
Val
GAC
[ENA]
¡û
>W1610516255
JABX01000007
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
117090
117166
+
Val
GAC
[ENA]
¡û
>W1610940728
LUUF01000056
Gammaproteobacteria
Methylomonas methanica [LUUF]
33179
33255
+
Val
GAC
[ENA]
¡û
>W1610940846
LUUI01000095
Gammaproteobacteria
Methylomonas lenta [LUUI]
171273
171197
-
Val
GAC
[ENA]
¡û
>W1610940903
LUUJ01000103
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
15092
15016
-
Val
GAC
[ENA]
¡û
>W1610940992
LUUL01000108
Gammaproteobacteria
Methylomonas koyamae [LUUL]
36338
36414
+
Val
GAC
[ENA]
¡û
>W1710043280
BBCK01000052
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
10033
10109
+
Val
GAC
[ENA]
¡û
>W1710611597
JABX01000007
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
117090
117166
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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