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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273325 (27 seq.)
>W1711129676
LUUF01000115
Gammaproteobacteria
Methylomonas methanica [LUUF]
69249
69325
+
Pro
TGG
[ENA]
¡û
>W1711129694
LUUG01000065
Gammaproteobacteria
Methylomonas methanica [LUUG]
70000
70076
+
Pro
TGG
[ENA]
¡û
>W1711129722
LUUH01000024
Gammaproteobacteria
Methylomonas methanica [LUUH]
35423
35499
+
Pro
TGG
[ENA]
¡û
>W1711129816
LUUJ01000049
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
111359
111435
+
Pro
TGG
[ENA]
¡û
>W1711129854
LUUK01000032
Gammaproteobacteria
Methylomonas koyamae [LUUK]
2206
2130
-
Pro
TGG
[ENA]
¡û
>W1711129900
LUUL01000062
Gammaproteobacteria
Methylomonas koyamae [LUUL]
660
584
-
Pro
TGG
[ENA]
¡û
>W1711494839
MKMC01000008
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
19445
19369
-
Pro
TGG
[ENA]
¡û
>W131155772
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
269724
269800
+
Pro
TGG
[ENA]
¡û
>WENV181843712
OGVU01052197
[OGVU] freshwater metagenome; freshwater
440
516
+
Pro
TGG
[ENA]
¢þ
>W141219935
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1431798
1431722
-
Pro
TGG
[ENA]
¡û
>WENV170577486
FSSH01000063
[FSSH] freshwater metagenome; drinking water
149323
149399
+
Pro
TGG
[ENA]
¢þ
>C181088667
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4073473
4073549
+
Pro
TGG
-
¡û
>C191105405
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
625077
625153
+
Pro
TGG
-
¡û
>W141733691
JNLB01000002
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
96739
96815
+
Pro
TGG
[ENA]
¡û
>W1910728784
MGXU01000010
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_36_30 [MGXU]
200963
200888
-
Pro
TGG
[ENA]
¡û
>W1810154922
PIZT01000007
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
70468
70544
+
Pro
TGG
[ENA]
¡û
>C11114737
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4513103
4513027
-
Pro
TGG
[Ensembl]
¡û
>W1511397877
JTDD01000064
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
27322
27246
-
Pro
TGG
[ENA]
¡û
>WENV047190
AACY022645105
Marine microbial communities from Global Ocean Sampling (GOS)
216
294
+
Pro
TGG
[ENA]
>C161072117
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
3985869
3985945
+
Pro
TGG
[Ensembl]
¡û
>C161072460
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
1391466
1391390
-
Pro
TGG
[Ensembl]
¡û
>W1610940749
LUUF01000115
Gammaproteobacteria
Methylomonas methanica [LUUF]
69249
69325
+
Pro
TGG
[ENA]
¡û
>W1610940767
LUUG01000065
Gammaproteobacteria
Methylomonas methanica [LUUG]
70000
70076
+
Pro
TGG
[ENA]
¡û
>W1610940795
LUUH01000024
Gammaproteobacteria
Methylomonas methanica [LUUH]
35423
35499
+
Pro
TGG
[ENA]
¡û
>W1610940889
LUUJ01000049
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
111359
111435
+
Pro
TGG
[ENA]
¡û
>W1610940927
LUUK01000032
Gammaproteobacteria
Methylomonas koyamae [LUUK]
2206
2130
-
Pro
TGG
[ENA]
¡û
>W1610940973
LUUL01000062
Gammaproteobacteria
Methylomonas koyamae [LUUL]
660
584
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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