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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273349 (36 seq.)
>W1711178229
LWGO01000002
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
190542
190618
+
Arg
TCT
[ENA]
¡û
>W1711750467
MUMZ01000060
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
29440
29516
+
Arg
TCT
[ENA]
¡û
>C171117494
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
3102387
3102463
+
Arg
TCT
-
¡û
>C171118032
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
134301
134225
-
Arg
TCT
-
¡û
>W131225907
AUDZ01000005
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
264343
264419
+
Arg
TCT
[ENA]
¡û
>W141152716
AXCA01000057
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
24846
24770
-
Arg
TCT
[ENA]
¡û
>W141212700
AZQX01000302
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
39203
39127
-
Arg
TCT
[ENA]
¡û
>WENV170683859
LFRM01008302
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
610
686
+
Arg
TCT
[ENA]
¢þ
>WENV170965478
MTEU01003078
[MTEU] soil metagenome; naturally attenuated soil
28158
28082
-
Arg
TCT
[ENA]
¢þ
>WENV170965724
MTEV01001036
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
5756
5832
+
Arg
TCT
[ENA]
¢þ
>WENV170966161
MTEX01003404
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
37424
37500
+
Arg
TCT
[ENA]
¢þ
>C181052464
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
1797704
1797780
+
Arg
TCT
-
¡û
>W141562099
JHYY01000008
Gammaproteobacteria
Halotalea alkalilenta DSM 17697 [JHYY]
43464
43388
-
Arg
TCT
[ENA]
¡û
>W1810199987
PNRF01000007
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
216757
216681
-
Arg
TCT
[ENA]
¡û
>W1810387645
PXWD01000001
Gammaproteobacteria
Halomonas sp. ND22Bw [PXWD]
99491
99567
+
Arg
TCT
[ENA]
¡û
>W1810424657
PYUQ02000012
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
255189
255265
+
Arg
TCT
[ENA]
¡û
>W1810608650
QGTM01000003
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
4843
4919
+
Arg
TCT
[ENA]
¡û
>W1810624125
QHGY01000001
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
359677
359601
-
Arg
TCT
[ENA]
¡û
>W1810758261
QPII01000021
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
47022
46946
-
Arg
TCT
[ENA]
¡û
>W1810760677
QPKI01000016
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
45896
45972
+
Arg
TCT
[ENA]
¡û
>W1511270566
JOKD01000009
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
139717
139641
-
Arg
TCT
[ENA]
¡û
>W1511500030
JXAS01000004
Gammaproteobacteria
Halomonas caseinilytica WD26 [JXAS]
88507
88583
+
Arg
TCT
[ENA]
¡û
>W1511565226
LAEZ01000038
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
117309
117385
+
Arg
TCT
[ENA]
¡û
>C161068827
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
1180436
1180512
+
Arg
TCT
[Ensembl]
¡û
>C161085563
CP015243
Gammaproteobacteria
Halotalea alkalilenta IHB B 13600 [CP015243]
2192125
2192201
+
Arg
TCT
[Ensembl]
¡û
>W121123952
BAEU01000124
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
51445
51521
+
Arg
TCT
[ENA]
¡û
>W1610082121
BDEO01000001
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
445205
445281
+
Arg
TCT
[ENA]
¡û
>W1610082185
BDEP01000004
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
57822
57746
-
Arg
TCT
[ENA]
¡û
>W1710080894
BDEO01000001
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
445205
445281
+
Arg
TCT
[ENA]
¡û
>W1710080958
BDEP01000004
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
57822
57746
-
Arg
TCT
[ENA]
¡û
>W1710524558
FNIV01000003
Gammaproteobacteria
Halomonas shengliensis [FNIV]
358397
358321
-
Arg
TCT
[ENA]
¡û
>W1710539129
FNVC01000001
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
225461
225537
+
Arg
TCT
[ENA]
¡û
>W1710545746
FOBT01000004
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
58143
58067
-
Arg
TCT
[ENA]
¡û
>W1710558486
FOLY01000001
Gammaproteobacteria
Kushneria avicenniae [FOLY]
243472
243396
-
Arg
TCT
[ENA]
¡û
>W1710589798
FRAL01000001
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [FRAL]
448400
448476
+
Arg
TCT
[ENA]
¡û
>W1710591865
FRCA01000009
Gammaproteobacteria
Halomonas cupida [FRCA]
74466
74542
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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