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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273382 (48 seq.)
>W1711120865
LUHG01000100
Bacteroidota
Hydrotalea flava [LUHG]
3326
3250
-
Pro
CGG
[ENA]
¡û
>W1711506239
MKWF01000050
Bacteroidota
Sphingobacteriales bacterium 40-81 [MKWF]
3317
3243
-
Pro
CGG
[ENA]
¡û
>W1711506265
MKWG01000022
Bacteroidota
Sphingobacteriales bacterium 44-15 [MKWG]
148054
147978
-
Pro
CGG
[ENA]
¡û
>W1711510306
MLAV01000062
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
39259
39335
+
Pro
CGG
[ENA]
¡û
>W1711510331
MLAV01000247
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
5602
5526
-
Pro
CGG
[ENA]
¡û
>W1711715368
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
3181255
3181329
+
Pro
CGG
[ENA]
¡û
>W131170035
ARFF01000026
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
701
627
-
Pro
CGG
[ENA]
¡û
>WENV180694161
OCZS012021419
[OCZS] soil metagenome; soil
160
86
-
Pro
CGG
[ENA]
¢þ
>WENV181172131
OEIV010503929
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
149
223
+
Pro
CGG
[ENA]
¢þ
>WENV181307937
OFIS01000048
[OFIS] sludge metagenome; sludge
59760
59834
+
Pro
CGG
[ENA]
¢þ
>WENV181308400
OFIS01012745
[OFIS] sludge metagenome; sludge
77
3
-
Pro
CGG
[ENA]
¢þ
>WENV181311734
OFJB01010198
[OFJB] sludge metagenome; sludge
2095
2021
-
Pro
CGG
[ENA]
¢þ
>WENV181401610
OFTX01001457
[OFTX] sludge metagenome; sludge
2667
2593
-
Pro
CGG
[ENA]
¢þ
>WENV181402077
OFTY01000090
[OFTY] sludge metagenome; sludge
3015
3089
+
Pro
CGG
[ENA]
¢þ
>W141170546
AXYK01000066
Bacteroidota
Chitinophagaceae bacterium JGI 0001013-J17 [AXYK]
4889
4963
+
Pro
CGG
[ENA]
¡û
>WENV170012282
APMI01146074
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
682
608
-
Pro
CGG
[ENA]
¢þ
>C181090222
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
3398518
3398592
+
Pro
CGG
-
¡û
>C191153667
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
3247989
3248063
+
Pro
CGG
-
¡û
>W1911787327
QXZY01000001
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
790385
790459
+
Pro
CGG
[ENA]
¡û
>W1810532582
QCYK01000003
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
622146
622072
-
Pro
CGG
[ENA]
¡û
>W1810533347
QCZJ01000018
Bacteroidota
Terrimonas sp. NS-102 [QCZJ]
16422
16346
-
Pro
CGG
[ENA]
¡û
>W1810586422
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
920442
920516
+
Pro
CGG
[ENA]
¡û
>W1810686109
QKZV01000003
Bacteroidota
Hydrotalea sandarakina DSM 23241 [QKZV]
20499
20425
-
Pro
CGG
[ENA]
¡û
>W1810695390
QLNL01000004
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
660636
660710
+
Pro
CGG
[ENA]
¡û
>W1810721947
QNTR01000004
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
660636
660710
+
Pro
CGG
[ENA]
¡û
>W1810745598
QOWJ01000001
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
394058
393984
-
Pro
CGG
[ENA]
¡û
>W1810858531
QTJV01000006
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
822771
822846
+
Pro
CGG
[ENA]
¡û
>C151016381
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
4649679
4649603
-
Pro
CGG
[Ensembl]
¡û
>W1510019474
BBWV01000005
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
77046
77122
+
Pro
CGG
[ENA]
¡û
>W1511300700
JPHF01000002
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
637829
637905
+
Pro
CGG
[ENA]
¡û
>W1511387771
JSVC01000016
Bacteroidota
Flavihumibacter solisilvae 3·î3Æü [JSVC]
11712
11636
-
Pro
CGG
[ENA]
¡û
>C161090542
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3451559
3451635
+
Pro
CGG
[Ensembl]
¡û
>C161092543
CP015971
Bacteroidota
Arachidicoccus sp. BS20 [CP015971]
543615
543539
-
Pro
CGG
[Ensembl]
¡û
>W121017740
AGSA01000025
Bacteroidota
Niabella soli DSM 19437 [AGSA]
232545
232621
+
Pro
CGG
[ENA]
¡û
>W1610503580
FLNQ01000026
Bacteroidota
Hydrotalea flava [FLNQ]
336
260
-
Pro
CGG
[ENA]
¡û
>W1610503632
FLNT01000063
Bacteroidota
Hydrotalea flava [FLNT]
7181
7257
+
Pro
CGG
[ENA]
¡û
>W1610617784
LGYU01000003
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
50229
50303
+
Pro
CGG
[ENA]
¡û
>W1610932062
LUHG01000100
Bacteroidota
Hydrotalea flava [LUHG]
3326
3250
-
Pro
CGG
[ENA]
¡û
>W1610935511
LUKG01000008
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
90532
90606
+
Pro
CGG
[ENA]
¡û
>W1710512658
FMZO01000001
Bacteroidota
Niabella drilacis [FMZO]
401054
400980
-
Pro
CGG
[ENA]
¡û
>W1710533202
FNQY01000024
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
58299
58373
+
Pro
CGG
[ENA]
¡û
>W1710573628
FOXQ01000001
Bacteroidota
Parafilimonas terrae [FOXQ]
143513
143589
+
Pro
CGG
[ENA]
¡û
>W1710583162
FQUO01000019
Bacteroidota
Cnuella takakiae [FQUO]
24552
24626
+
Pro
CGG
[ENA]
¡û
>W1710594099
FSRA01000001
Bacteroidota
Chitinophaga niabensis [FSRA]
2490382
2490456
+
Pro
CGG
[ENA]
¡û
>W1710600257
FUWH01000003
Bacteroidota
Sediminibacterium ginsengisoli [FUWH]
279191
279115
-
Pro
CGG
[ENA]
¡û
>W1710601097
FUWZ01000003
Bacteroidota
Chitinophaga eiseniae [FUWZ]
778220
778296
+
Pro
CGG
[ENA]
¡û
>W1710604493
FUZZ01000001
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
1252910
1252986
+
Pro
CGG
[ENA]
¡û
>W1710743837
LGYU01000003
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
50229
50303
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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