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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273447 (82 seq.)
>W1710785121
LJHP01000001
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
254159
254083
-
Arg
CCT
[ENA]
¡û
>W1710858208
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
129444
129520
+
Arg
CCT
[ENA]
¡û
>W1710866205
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
836940
837016
+
Arg
CCT
[ENA]
¡û
>W1710913041
LNSD01000001
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1710913086
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
421465
421541
+
Arg
CCT
[ENA]
¡û
>W1710913131
LNSF01000001
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1710913175
LNSG01000001
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
287174
287250
+
Arg
CCT
[ENA]
¡û
>W1710913229
LNSH01000003
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1710913278
LNSI01000003
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
257570
257646
+
Arg
CCT
[ENA]
¡û
>W1710913323
LNSJ01000004
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
244371
244295
-
Arg
CCT
[ENA]
¡û
>W1710913390
LNSK01000005
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
6289
6213
-
Arg
CCT
[ENA]
¡û
>W1711073462
LSIO01000105
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
133315
133391
+
Arg
CCT
[ENA]
¡û
>W1711073595
LSIS01000021
Alphaproteobacteria
Blastomonas sp. CCH1-A6 [LSIS]
19302
19378
+
Arg
CCT
[ENA]
¡û
>W1711253280
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
931439
931515
+
Arg
CCT
[ENA]
¡û
>W1711261663
LYWY01000019
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
88041
87965
-
Arg
CCT
[ENA]
¡û
>W1711503972
MKUC01000088
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
37421
37345
-
Arg
CCT
[ENA]
¡û
>C171049909
CP016460
Alphaproteobacteria
Blastomonas sp. RAC04 [CP016460]
612837
612913
+
Arg
CCT
-
¡û
>C171056559
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
743845
743921
+
Arg
CCT
-
¡û
>C171096148
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
931439
931515
+
Arg
CCT
-
¡û
>W131058872
ANFZ01000009
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
609866
609790
-
Arg
CCT
[ENA]
¡û
>W131100442
AOUN01000024
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
44475
44551
+
Arg
CCT
[ENA]
¡û
>C019749
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1886755
1886679
-
Arg
CCT
[Ensembl]
¡û
>WENV181227091
OFDN01001723
[OFDN] hot springs metagenome; Water
1220
1296
+
Arg
CCT
[ENA]
¢þ
>WENV181308309
OFIS01003222
[OFIS] sludge metagenome; sludge
120
196
+
Arg
CCT
[ENA]
¢þ
>WENV181402010
OFTY01000029
[OFTY] sludge metagenome; sludge
7876
7800
-
Arg
CCT
[ENA]
¢þ
>W141193330
AYSC01000017
Alphaproteobacteria
Blastomonas sp. CACIA14H2 [AYSC]
63374
63450
+
Arg
CCT
[ENA]
¡û
>WENV183631362
OOGU01089933
[OOGU] marine metagenome; sea ice
295
219
-
Arg
CCT
[ENA]
¢þ
>WENV183729526
PJTQ01060070
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
139
215
+
Arg
CCT
[ENA]
¢þ
>WENV183739436
PJUE01017037
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
456
532
+
Arg
CCT
[ENA]
¢þ
>WENV183750215
PPFU01273070
[PPFU] hypolithon metagenome; Antarctic Hypolithon
80
4
-
Arg
CCT
[ENA]
¢þ
>WENV170002491
AGTN01049094
[AGTN] bioreactor metagenome; poplar biomass
91
167
+
Arg
CCT
[ENA]
¢þ
>WENV170004021
AGTN01537567
[AGTN] bioreactor metagenome; poplar biomass
108
184
+
Arg
CCT
[ENA]
¢þ
>WENV170004515
AGTN01706398
[AGTN] bioreactor metagenome; poplar biomass
110
186
+
Arg
CCT
[ENA]
¢þ
>WENV170176317
CEOS01062552
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6242
6166
-
Arg
CCT
[ENA]
¢þ
>WENV170201748
CEPQ01048749
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
54379
54455
+
Arg
CCT
[ENA]
¢þ
>WENV170278451
CERQ01095658
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6244
6168
-
Arg
CCT
[ENA]
¢þ
>WENV170991514
MWWA01220911
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
443
367
-
Arg
CCT
[ENA]
¢þ
>W141484919
JFYZ01000001
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
693513
693589
+
Arg
CCT
[ENA]
¡û
>C181133080
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
2945087
2945011
-
Arg
CCT
-
¡û
>C191000581
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
2089831
2089755
-
Arg
CCT
-
¡û
>C191017396
CP020083
Alphaproteobacteria
Blastomonas fulva T2 [CP020083]
2586624
2586700
+
Arg
CCT
-
¡û
>C191155775
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
927348
927272
-
Arg
CCT
-
¡û
>W09102940
AAIP01000001
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
95482
95406
-
Arg
CCT
[ENA]
¡û
>W1910501757
FYAT01000002
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
17789
17713
-
Arg
CCT
[ENA]
¡û
>W1910549120
FZPA01000009
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
83476
83552
+
Arg
CCT
[ENA]
¡û
>W1910727959
MGVU01000364
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
2943
2867
-
Arg
CCT
[ENA]
¡û
>W1910744258
MIAJ01000019
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 [MIAJ]
58543
58619
+
Arg
CCT
[ENA]
¡û
>W1910934254
NIWD01000008
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
978577
978653
+
Arg
CCT
[ENA]
¡û
>W1911737882
QTTB01000004
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
903401
903477
+
Arg
CCT
[ENA]
¡û
>W1911802688
QYUM01000002
Alphaproteobacteria
Sphingomonas cavernae K2R01-6 [QYUM]
126089
126013
-
Arg
CCT
[ENA]
¡û
>W1810658698
QJJM01000020
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
28109
28185
+
Arg
CCT
[ENA]
¡û
>W1810683163
QKVT01000001
Alphaproteobacteria
Blastomonas sp. UPD001 [QKVT]
1026950
1026874
-
Arg
CCT
[ENA]
¡û
>C151051489
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
779993
780069
+
Arg
CCT
-
¡û
>W1511352521
JROG01000003
Alphaproteobacteria
Sphingomonas sp. 35-24ZXX 35-24ZXX 35-24zxx [JROG]
561054
560978
-
Arg
CCT
[ENA]
¡û
>C11121260
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6 [AP012222]
1959870
1959946
+
Arg
CCT
[Ensembl]
¡û
>C161040508
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
3971502
3971426
-
Arg
CCT
[Ensembl]
¡û
>C161055635
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
783673
783597
-
Arg
CCT
[Ensembl]
¡û
>C161099951
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
2210923
2210847
-
Arg
CCT
[Ensembl]
¡û
>W121119234
ALVC01000167
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
2289
2365
+
Arg
CCT
[ENA]
¡û
>W1610071215
BCTX01000001
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
105499
105575
+
Arg
CCT
[ENA]
¡û
>W1610071396
BCUA01000176
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
110
34
-
Arg
CCT
[ENA]
¡û
>W1610077679
BCZQ01000014
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
27906
27982
+
Arg
CCT
[ENA]
¡û
>W1610648927
LJHP01000001
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
254159
254083
-
Arg
CCT
[ENA]
¡û
>W1610720554
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
129444
129520
+
Arg
CCT
[ENA]
¡û
>W1610728551
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
836940
837016
+
Arg
CCT
[ENA]
¡û
>W1610771400
LNSD01000001
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1610771445
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
421465
421541
+
Arg
CCT
[ENA]
¡û
>W1610771490
LNSF01000001
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1610771534
LNSG01000001
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
287174
287250
+
Arg
CCT
[ENA]
¡û
>W1610771588
LNSH01000003
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
290312
290236
-
Arg
CCT
[ENA]
¡û
>W1610771637
LNSI01000003
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
257570
257646
+
Arg
CCT
[ENA]
¡û
>W1610771682
LNSJ01000004
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
244371
244295
-
Arg
CCT
[ENA]
¡û
>W1610771749
LNSK01000005
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
6289
6213
-
Arg
CCT
[ENA]
¡û
>W1610912767
LSIO01000105
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
133315
133391
+
Arg
CCT
[ENA]
¡û
>W1610912900
LSIS01000021
Alphaproteobacteria
Blastomonas sp. CCH1-A6 [LSIS]
19302
19378
+
Arg
CCT
[ENA]
¡û
>W1611017817
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
931439
931515
+
Arg
CCT
[ENA]
¡û
>W1611023638
LYWY01000019
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
88041
87965
-
Arg
CCT
[ENA]
¡û
>W1710068580
BCTX01000001
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
105499
105575
+
Arg
CCT
[ENA]
¡û
>W1710068761
BCUA01000176
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
110
34
-
Arg
CCT
[ENA]
¡û
>W1710075317
BCZQ01000014
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
27906
27982
+
Arg
CCT
[ENA]
¡û
>W1710562072
FOOR01000007
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
79450
79374
-
Arg
CCT
[ENA]
¡û
>W1710602897
FUYP01000018
Alphaproteobacteria
Sphingopyxis flava [FUYP]
4061
3985
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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