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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273487 (86 seq.)
>W1710808912
LKDZ01000008
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
46795
46871
+
Pro
TGG
[ENA]
¡û
>W1710821627
LKTU01000016
Betaproteobacteria
Variovorax paradoxus [LKTU]
142883
142959
+
Pro
TGG
[ENA]
¡û
>W1710821703
LKTV01000082
Betaproteobacteria
Variovorax paradoxus [LKTV]
40422
40498
+
Pro
TGG
[ENA]
¡û
>W1710821741
LKTW01000082
Betaproteobacteria
Variovorax paradoxus [LKTW]
1103
1027
-
Pro
TGG
[ENA]
¡û
>W1710821798
LKTX01000073
Betaproteobacteria
Variovorax paradoxus [LKTX]
40411
40487
+
Pro
TGG
[ENA]
¡û
>W1710821851
LKTY01000075
Betaproteobacteria
Variovorax paradoxus [LKTY]
40412
40488
+
Pro
TGG
[ENA]
¡û
>W1710821895
LKTZ01000065
Betaproteobacteria
Variovorax paradoxus [LKTZ]
43730
43806
+
Pro
TGG
[ENA]
¡û
>W1710860129
LMCQ01000011
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
36304
36380
+
Pro
TGG
[ENA]
¡û
>W1710861777
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
42878
42802
-
Pro
TGG
[ENA]
¡û
>W1710862505
LMEK01000027
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
200058
200134
+
Pro
TGG
[ENA]
¡û
>W1710863093
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
1080641
1080565
-
Pro
TGG
[ENA]
¡û
>W1711123815
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
346308
346384
+
Pro
TGG
[ENA]
¡û
>W1711143365
LVHG01000055
Betaproteobacteria
Variovorax paradoxus [LVHG]
79109
79185
+
Pro
TGG
[ENA]
¡û
>W1711386522
MEFM01000059
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
378863
378939
+
Pro
TGG
[ENA]
¡û
>W1711387501
MEGR01000097
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
373509
373433
-
Pro
TGG
[ENA]
¡û
>W1711506633
MKWO01000041
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
82710
82786
+
Pro
TGG
[ENA]
¡û
>W131174626
ARIP01000053
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
110033
110109
+
Pro
TGG
[ENA]
¡û
>W131180360
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
738138
738214
+
Pro
TGG
[ENA]
¡û
>W131214384
ATUC01000035
Betaproteobacteria
Variovorax sp. JGI 001013-H06 [ATUC]
4354
4430
+
Pro
TGG
[ENA]
¡û
>WENV180019580
FTCD01000119
[FTCD] metagenome; soil
952
1028
+
Pro
TGG
[ENA]
¢þ
>WENV181364789
OFPD01000057
[OFPD] sediment metagenome; Lake sediment
348
424
+
Pro
TGG
[ENA]
¢þ
>WENV181372075
OFQW01013537
[OFQW] wastewater metagenome; Exp Tend NO 90WW
931
855
-
Pro
TGG
[ENA]
¢þ
>W141170368
AXXS01000019
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
12346
12270
-
Pro
TGG
[ENA]
¡û
>WENV183731166
PJTS01014906
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
268
344
+
Pro
TGG
[ENA]
¢þ
>WENV183735660
PJUB01000372
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
5476
5400
-
Pro
TGG
[ENA]
¢þ
>WENV183736339
PJUC01000908
[PJUC] soil metagenome; Soil enriched on filter paper
5496
5420
-
Pro
TGG
[ENA]
¢þ
>WENV183741391
PJUG01000002
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
217523
217447
-
Pro
TGG
[ENA]
¢þ
>WENV183741898
PJUH01000003
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
596551
596627
+
Pro
TGG
[ENA]
¢þ
>WENV183744405
PJUK01017899
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
231
155
-
Pro
TGG
[ENA]
¢þ
>WENV170557975
CXWL01044768
[CXWL] groundwater metagenome; biofilm material
1847
1923
+
Pro
TGG
[ENA]
¢þ
>WENV171003362
NNBT01006790
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
443
519
+
Pro
TGG
[ENA]
¢þ
>WENV171003616
NNBU01000823
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
727
651
-
Pro
TGG
[ENA]
¢þ
>C181078472
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4204676
4204752
+
Pro
TGG
-
¡û
>C181159369
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
741338
741414
+
Pro
TGG
-
¡û
>W141558066
JHVQ01000003
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
865973
865897
-
Pro
TGG
[ENA]
¡û
>W09119927
ACEE01000018
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
44115
44191
+
Pro
TGG
[ENA]
¡û
>C141002576
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2595754
2595678
-
Pro
TGG
[Ensembl]
¡û
>W1910792813
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
529210
529134
-
Pro
TGG
[ENA]
¡û
>C09111125
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2460750
2460674
-
Pro
TGG
[Ensembl]
¡û
>W1911496697
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4337958
4338034
+
Pro
TGG
[ENA]
¡û
>W1911647329
QAJK01000024
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
35691
35615
-
Pro
TGG
[ENA]
¡û
>W1911775304
QXMN01000002
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
150920
150996
+
Pro
TGG
[ENA]
¡û
>W1810072210
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
447106
447182
+
Pro
TGG
[ENA]
¡û
>W1810486649
QAYA01000001
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
264446
264370
-
Pro
TGG
[ENA]
¡û
>W1810577504
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
359772
359696
-
Pro
TGG
[ENA]
¡û
>W1810672520
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
264446
264370
-
Pro
TGG
[ENA]
¡û
>W1810676088
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
264446
264370
-
Pro
TGG
[ENA]
¡û
>W1810682457
QKUE01000001
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
264446
264370
-
Pro
TGG
[ENA]
¡û
>SRA1015788
SRR023846.200981
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
13
89
+
Pro
TGG
[SRA]
>SRA1016479
SRR023846.522768
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
13
89
+
Pro
TGG
[SRA]
>W1511352975
JROV01001082
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
5522
5446
-
Pro
TGG
[ENA]
¡û
>C11123614
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
2690914
2690838
-
Pro
TGG
[Ensembl]
¡û
>W1511508919
JXQQ01000016
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
37147
37071
-
Pro
TGG
[ENA]
¡û
>W1511554998
JZWI01000014
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
6635
6711
+
Pro
TGG
[ENA]
¡û
>C161073156
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
42738
42814
+
Pro
TGG
[Ensembl]
¡û
>W121084979
AKIW01000087
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
13320
13244
-
Pro
TGG
[ENA]
¡û
>W1610072147
BCUS01000021
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
61799
61875
+
Pro
TGG
[ENA]
¡û
>W1610072181
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
208582
208658
+
Pro
TGG
[ENA]
¡û
>W1610685589
LKTU01000016
Betaproteobacteria
Variovorax paradoxus [LKTU]
142883
142959
+
Pro
TGG
[ENA]
¡û
>W1610685665
LKTV01000082
Betaproteobacteria
Variovorax paradoxus [LKTV]
40422
40498
+
Pro
TGG
[ENA]
¡û
>W1610685703
LKTW01000082
Betaproteobacteria
Variovorax paradoxus [LKTW]
1103
1027
-
Pro
TGG
[ENA]
¡û
>W1610685760
LKTX01000073
Betaproteobacteria
Variovorax paradoxus [LKTX]
40411
40487
+
Pro
TGG
[ENA]
¡û
>W1610685813
LKTY01000075
Betaproteobacteria
Variovorax paradoxus [LKTY]
40412
40488
+
Pro
TGG
[ENA]
¡û
>W1610685857
LKTZ01000065
Betaproteobacteria
Variovorax paradoxus [LKTZ]
43730
43806
+
Pro
TGG
[ENA]
¡û
>W1610722475
LMCQ01000011
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
36304
36380
+
Pro
TGG
[ENA]
¡û
>W1610724123
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
42878
42802
-
Pro
TGG
[ENA]
¡û
>W1610724851
LMEK01000027
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
200058
200134
+
Pro
TGG
[ENA]
¡û
>W1610725439
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
1080641
1080565
-
Pro
TGG
[ENA]
¡û
>W1610954373
LVHG01000055
Betaproteobacteria
Variovorax paradoxus [LVHG]
79109
79185
+
Pro
TGG
[ENA]
¡û
>W1710069349
BCUS01000021
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
61799
61875
+
Pro
TGG
[ENA]
¡û
>W1710069383
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
208582
208658
+
Pro
TGG
[ENA]
¡û
>W1710506195
FMUJ01000003
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
734188
734264
+
Pro
TGG
[ENA]
¡û
>W1710517957
FNDR01000007
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
234
158
-
Pro
TGG
[ENA]
¡û
>W1710530026
FNOL01000005
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
13021
12945
-
Pro
TGG
[ENA]
¡û
>W1710531354
FNPM01000002
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
747945
748021
+
Pro
TGG
[ENA]
¡û
>W1710538141
FNUI01000006
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
9539
9463
-
Pro
TGG
[ENA]
¡û
>W1710539554
FNVM01000006
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
483905
483981
+
Pro
TGG
[ENA]
¡û
>W1710542712
FNZJ01000003
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
6604
6528
-
Pro
TGG
[ENA]
¡û
>W1710545278
FOBJ01000001
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
747248
747324
+
Pro
TGG
[ENA]
¡û
>W1710554284
FOII01000001
Betaproteobacteria
Variovorax sp. OV084 [FOII]
1302548
1302624
+
Pro
TGG
[ENA]
¡û
>W1710557140
FOKS01000006
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
9489
9413
-
Pro
TGG
[ENA]
¡û
>W1710558151
FOLP01000003
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
6550
6474
-
Pro
TGG
[ENA]
¡û
>W1710562246
FOOV01000003
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
483907
483983
+
Pro
TGG
[ENA]
¡û
>W1710571862
FOWG01000002
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
1894
1818
-
Pro
TGG
[ENA]
¡û
>W1710572106
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
769007
769083
+
Pro
TGG
[ENA]
¡û
>W1710573292
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
1028813
1028737
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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