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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273531 (36 seq.)
>W1710864845
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
168944
168868
-
Arg
CCT
[ENA]
¡û
>W1710865501
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
510382
510306
-
Arg
CCT
[ENA]
¡û
>W1710866130
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
407200
407124
-
Arg
CCT
[ENA]
¡û
>W1710867611
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
78513
78589
+
Arg
CCT
[ENA]
¡û
>W1710868618
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
520908
520832
-
Arg
CCT
[ENA]
¡û
>W1710868961
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
78508
78584
+
Arg
CCT
[ENA]
¡û
>W1710869019
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
173782
173858
+
Arg
CCT
[ENA]
¡û
>W131244885
CAQP01000093
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
5834
5910
+
Arg
CCT
[ENA]
¡û
>W1711384937
MEDO01000001
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
58708
58632
-
Arg
CCT
[ENA]
¡û
>W1711711501
MTAY01000034
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
65823
65747
-
Arg
CCT
[ENA]
¡û
>W141094288
AVCJ01000001
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
38638
38562
-
Arg
CCT
[ENA]
¡û
>W141282853
JAJA01000028
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
74293
74217
-
Arg
CCT
[ENA]
¡û
>WENV182938470
OKVD01014271
[OKVD] human gut metagenome; human gut
237
161
-
Arg
CCT
[ENA]
¢þ
>WENV182941822
OKVG01009399
[OKVG] human gut metagenome; human gut
1751
1675
-
Arg
CCT
[ENA]
¢þ
>WENV182952200
OKVV01013311
[OKVV] human gut metagenome; human gut
434
358
-
Arg
CCT
[ENA]
¢þ
>WENV170574468
FLYM01042443
[FLYM] hot springs metagenome; Sediment
794
718
-
Arg
CCT
[ENA]
¢þ
>C181001022
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
4022957
4023033
+
Arg
CCT
-
¡û
>C191181084
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
2084367
2084291
-
Arg
CCT
-
¡û
>W141713927
JMTZ01000086
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
19839
19915
+
Arg
CCT
[ENA]
¡û
>W1810860384
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
463018
462942
-
Arg
CCT
[ENA]
¡û
>W1511595024
LBMI01000007
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
264809
264885
+
Arg
CCT
[ENA]
¡û
>C161031561
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
3981077
3981153
+
Arg
CCT
[Ensembl]
¡û
>C161031612
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
3801140
3801216
+
Arg
CCT
[Ensembl]
¡û
>C161031676
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
1969112
1969036
-
Arg
CCT
[Ensembl]
¡û
>C161052067
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
1887350
1887274
-
Arg
CCT
[Ensembl]
¡û
>C161052081
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
5060260
5060336
+
Arg
CCT
-
¡û
>W1610727191
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
168944
168868
-
Arg
CCT
[ENA]
¡û
>W1610727847
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
510382
510306
-
Arg
CCT
[ENA]
¡û
>W1610728476
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
407200
407124
-
Arg
CCT
[ENA]
¡û
>W1610729957
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
78513
78589
+
Arg
CCT
[ENA]
¡û
>W1610730964
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
520908
520832
-
Arg
CCT
[ENA]
¡û
>W1610731307
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
78508
78584
+
Arg
CCT
[ENA]
¡û
>W1610731365
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
173782
173858
+
Arg
CCT
[ENA]
¡û
>W1710529762
FNOG01000004
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
514032
514108
+
Arg
CCT
[ENA]
¡û
>W1710531723
FNPT01000002
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
420888
420812
-
Arg
CCT
[ENA]
¡û
>W1710567393
FOSS01000002
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
492141
492217
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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