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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273554 (93 seq.)
>W1710785127
LJHP01000002
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
432060
432136
+
Arg
CCG
[ENA]
¡û
>W1710869796
LMJZ01000023
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
52066
51990
-
Arg
CCG
[ENA]
¡û
>W1710870152
LMKH01000012
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
107550
107626
+
Arg
CCG
[ENA]
¡û
>W1710870442
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
759894
759970
+
Arg
CCG
[ENA]
¡û
>W1710870566
LMKP01000043
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
48271
48195
-
Arg
CCG
[ENA]
¡û
>W1710870708
LMKS01000021
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
52025
51949
-
Arg
CCG
[ENA]
¡û
>W1710870726
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
35036
34960
-
Arg
CCG
[ENA]
¡û
>W1710870768
LMKU01000001
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
44558
44482
-
Arg
CCG
[ENA]
¡û
>W1710870876
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
309692
309768
+
Arg
CCG
[ENA]
¡û
>W1710870954
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
159935
159859
-
Arg
CCG
[ENA]
¡û
>W1710871057
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
507150
507074
-
Arg
CCG
[ENA]
¡û
>W1710871181
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
455588
455512
-
Arg
CCG
[ENA]
¡û
>W1710871230
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1352813
1352889
+
Arg
CCG
[ENA]
¡û
>W1710871334
LMLF01000008
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
44203
44127
-
Arg
CCG
[ENA]
¡û
>W1710872084
LMLS01000002
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
1018149
1018073
-
Arg
CCG
[ENA]
¡û
>W1710872290
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
218677
218601
-
Arg
CCG
[ENA]
¡û
>W1710876490
LMPG01000015
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
211779
211855
+
Arg
CCG
[ENA]
¡û
>W1710876738
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
787337
787261
-
Arg
CCG
[ENA]
¡û
>W1710877210
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
170785
170709
-
Arg
CCG
[ENA]
¡û
>W1710878012
LMQO01000005
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
44249
44173
-
Arg
CCG
[ENA]
¡û
>W1710878030
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
371039
371115
+
Arg
CCG
[ENA]
¡û
>C171030386
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
2231932
2232008
+
Arg
CCG
-
¡û
>C171049932
CP016460
Alphaproteobacteria
Blastomonas sp. RAC04 [CP016460]
3765260
3765184
-
Arg
CCG
-
¡û
>W131045392
AMRK01000004
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
299773
299849
+
Arg
CCG
[ENA]
¡û
>W131058856
ANFZ01000002
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
170686
170610
-
Arg
CCG
[ENA]
¡û
>W131213862
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
1309622
1309546
-
Arg
CCG
[ENA]
¡û
>W131219256
ATYK01000002
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
1291736
1291812
+
Arg
CCG
[ENA]
¡û
>WENV180105348
OAPD01036828
[OAPD] marine metagenome; 2010
252
176
-
Arg
CCG
[ENA]
¢þ
>WENV180107872
OAPH01014869
[OAPH] marine metagenome; seawater
180
104
-
Arg
CCG
[ENA]
¢þ
>WENV180355095
OBNG01005297
[OBNG] sediment metagenome; sediment
348
272
-
Arg
CCG
[ENA]
¢þ
>WENV181399403
OFSE01029053
[OFSE] wastewater metagenome; Exp Tend VB 50WW
377
453
+
Arg
CCG
[ENA]
¢þ
>WENV170016532
AZIK01012088
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
446
370
-
Arg
CCG
[ENA]
¢þ
>WENV170715073
LNFM01131111
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
955
1031
+
Arg
CCG
[ENA]
¢þ
>C191017417
CP020083
Alphaproteobacteria
Blastomonas fulva T2 [CP020083]
1819263
1819187
-
Arg
CCG
-
¡û
>C191154753
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
2731482
2731558
+
Arg
CCG
-
¡û
>C191163776
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1315441
1315365
-
Arg
CCG
-
¡û
>W141801043
JPDP01000600
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
17503
17427
-
Arg
CCG
[ENA]
¡û
>W141805191
JPJC01000263
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
17198
17122
-
Arg
CCG
[ENA]
¡û
>W1910005006
AWWI01000063
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
32865
32941
+
Arg
CCG
[ENA]
¡û
>W1910547106
FZNN01000004
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
150887
150811
-
Arg
CCG
[ENA]
¡û
>SRA1005787
SRR014587.133764
Metagenomic analysis of viruses in reclaimed water (SRP000673)
198
122
-
Arg
CCG
[SRA]
>SRA1005836
SRR014587.278475
Metagenomic analysis of viruses in reclaimed water (SRP000673)
198
122
-
Arg
CCG
[SRA]
>W1810463427
PZZN01000002
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
479002
478926
-
Arg
CCG
[ENA]
¡û
>W1810475071
QAIS01000554
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
1989
2065
+
Arg
CCG
[ENA]
¡û
>W1810476731
QAOF01000009
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
92931
93007
+
Arg
CCG
[ENA]
¡û
>W1810476756
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
469638
469562
-
Arg
CCG
[ENA]
¡û
>W1810486881
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
441627
441551
-
Arg
CCG
[ENA]
¡û
>SRA1014330
SRR023845.91857
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
161
85
-
Arg
CCG
[SRA]
>SRA1014444
SRR023845.144546
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
156
80
-
Arg
CCG
[SRA]
>SRA1014556
SRR023845.197854
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
83
159
+
Arg
CCG
[SRA]
>SRA1014603
SRR023845.220906
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
50
126
+
Arg
CCG
[SRA]
>SRA1014980
SRR023845.408711
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
100
24
-
Arg
CCG
[SRA]
>SRA1015011
SRR023845.421866
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
107
31
-
Arg
CCG
[SRA]
>SRA1015097
SRR023845.459061
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
158
234
+
Arg
CCG
[SRA]
>SRA1015135
SRR023845.472873
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
160
236
+
Arg
CCG
[SRA]
>SRA1015433
SRR023846.55660
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
156
+
Arg
CCG
[SRA]
>SRA1016206
SRR023846.402734
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
209
133
-
Arg
CCG
[SRA]
>SRA1016224
SRR023846.408631
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
97
173
+
Arg
CCG
[SRA]
>SRA1016402
SRR023846.481403
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
194
+
Arg
CCG
[SRA]
>SRA1016513
SRR023846.539317
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
22
98
+
Arg
CCG
[SRA]
>C151054357
CP009571
Alphaproteobacteria
Sphingomonas taxi ATCC 55669 [CP009571]
2456069
2455993
-
Arg
CCG
[Ensembl]
¡û
>C151073225
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
384923
384847
-
Arg
CCG
[Ensembl]
¡û
>W1511352564
JROH01000013
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
3890
3966
+
Arg
CCG
[ENA]
¡û
>W1511357071
JRVI01000154
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
1243
1319
+
Arg
CCG
[ENA]
¡û
>W121031748
AHHA01000015
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
30195
30271
+
Arg
CCG
[ENA]
¡û
>W121033234
AHIR01000012
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
288904
288980
+
Arg
CCG
[ENA]
¡û
>W121033262
AHIS01000006
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
43848
43772
-
Arg
CCG
[ENA]
¡û
>W121046831
AIDW01000037
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
166724
166648
-
Arg
CCG
[ENA]
¡û
>W1610076700
BCYY01000014
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
5887
5963
+
Arg
CCG
[ENA]
¡û
>W1610648933
LJHP01000002
Alphaproteobacteria
Blastomonas sp. AAP25 [LJHP]
432060
432136
+
Arg
CCG
[ENA]
¡û
>W1610732142
LMJZ01000023
Alphaproteobacteria
Sphingomonas sp. Leaf5 [LMJZ]
52066
51990
-
Arg
CCG
[ENA]
¡û
>W1610732498
LMKH01000012
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
107550
107626
+
Arg
CCG
[ENA]
¡û
>W1610732788
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
759894
759970
+
Arg
CCG
[ENA]
¡û
>W1610732912
LMKP01000043
Alphaproteobacteria
Sphingomonas sp. Leaf22 [LMKP]
48271
48195
-
Arg
CCG
[ENA]
¡û
>W1610733054
LMKS01000021
Alphaproteobacteria
Sphingomonas sp. Leaf24 [LMKS]
52025
51949
-
Arg
CCG
[ENA]
¡û
>W1610733072
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
35036
34960
-
Arg
CCG
[ENA]
¡û
>W1610733114
LMKU01000001
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
44558
44482
-
Arg
CCG
[ENA]
¡û
>W1610733222
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
309692
309768
+
Arg
CCG
[ENA]
¡û
>W1610733300
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
159935
159859
-
Arg
CCG
[ENA]
¡û
>W1610733403
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
507150
507074
-
Arg
CCG
[ENA]
¡û
>W1610733527
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
455588
455512
-
Arg
CCG
[ENA]
¡û
>W1610733576
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1352813
1352889
+
Arg
CCG
[ENA]
¡û
>W1610733680
LMLF01000008
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
44203
44127
-
Arg
CCG
[ENA]
¡û
>W1610734430
LMLS01000002
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
1018149
1018073
-
Arg
CCG
[ENA]
¡û
>W1610734636
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
218677
218601
-
Arg
CCG
[ENA]
¡û
>W1610738836
LMPG01000015
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
211779
211855
+
Arg
CCG
[ENA]
¡û
>W1610739084
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
787337
787261
-
Arg
CCG
[ENA]
¡û
>W1610739556
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
170785
170709
-
Arg
CCG
[ENA]
¡û
>W1610740358
LMQO01000005
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
44249
44173
-
Arg
CCG
[ENA]
¡û
>W1610740376
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
371039
371115
+
Arg
CCG
[ENA]
¡û
>W1710074389
BCYY01000014
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
5887
5963
+
Arg
CCG
[ENA]
¡û
>W1710509104
FMWX01000002
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
457068
456992
-
Arg
CCG
[ENA]
¡û
>W1710571510
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
72347
72271
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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