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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273565 (50 seq.)
>W1710873430
LMMT01000039
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
252007
251931
-
Gln
TTG
[ENA]
¡û
>W1710873519
LMMV01000022
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
323954
323878
-
Gln
TTG
[ENA]
¡û
>W1710873740
LMNA01000011
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
14660
14736
+
Gln
TTG
[ENA]
¡û
>W1710876435
LMPF01000020
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
41439
41515
+
Gln
TTG
[ENA]
¡û
>W1710924045
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
193483
193407
-
Gln
TTG
[ENA]
¡û
>W1711409703
MGPB01000024
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
138839
138763
-
Gln
TTG
[ENA]
¡û
>W1711706645
MSRG01000068
Betaproteobacteria
Caballeronia sordidicola [MSRG]
129358
129282
-
Gln
TTG
[ENA]
¡û
>W1711957358
NBTY01000212
Betaproteobacteria
Caballeronia sordidicola [NBTY]
143389
143313
-
Gln
TTG
[ENA]
¡û
>W1711957370
NBTZ01000046
Betaproteobacteria
Caballeronia sordidicola [NBTZ]
127657
127581
-
Gln
TTG
[ENA]
¡û
>C171091642
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
4489526
4489602
+
Gln
TTG
-
¡û
>C171091707
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
895208
895132
-
Gln
TTG
-
¡û
>C018601
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
1791571
1791647
+
Gln
TTG
[Ensembl]
¡û
>WENV180022084
FTFO01000178
[FTFO] metagenome; soil
940
1016
+
Gln
TTG
[ENA]
¢þ
>w008224
AAJK01000008
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
75970
76048
+
Gln
TTG
[ENA]
¡û
>WENV180208744
OBAJ01031047
[OBAJ] marine metagenome; Coastal water
327
251
-
Gln
TTG
[ENA]
¢þ
>WENV180256953
OBEQ010867551
[OBEQ] groundwater metagenome; groundwater
95
19
-
Gln
TTG
[ENA]
¢þ
>WENV181364840
OFPE01001407
[OFPE] sediment metagenome; Lake sediment
874
798
-
Gln
TTG
[ENA]
¢þ
>WENV181365457
OFPR01000510
[OFPR] sediment metagenome; Lake sediment
1319
1395
+
Gln
TTG
[ENA]
¢þ
>WENV181369682
OFQP01021251
[OFQP] freshwater metagenome; Freshwater Lake
441
517
+
Gln
TTG
[ENA]
¢þ
>WENV181372015
OFQW01008406
[OFQW] wastewater metagenome; Exp Tend NO 90WW
880
804
-
Gln
TTG
[ENA]
¢þ
>WENV181380257
OFRD01048029
[OFRD] wastewater metagenome; Exp Tend CN 100WW
199
123
-
Gln
TTG
[ENA]
¢þ
>WENV181401262
OFSF01100912
[OFSF] wastewater metagenome; Exp Tend VB 100WW
452
376
-
Gln
TTG
[ENA]
¢þ
>W141142466
AWQR01000052
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
6329
6253
-
Gln
TTG
[ENA]
¡û
>WENV170557918
CXWL01042646
[CXWL] groundwater metagenome; biofilm material
1824
1748
-
Gln
TTG
[ENA]
¢þ
>W141557885
JHVM01000012
Betaproteobacteria
Deefgea rivuli DSM 18356 [JHVM]
103552
103628
+
Gln
TTG
[ENA]
¡û
>W141557889
JHVM01000014
Betaproteobacteria
Deefgea rivuli DSM 18356 [JHVM]
85201
85125
-
Gln
TTG
[ENA]
¡û
>W141727661
JNFG01000006
Betaproteobacteria
Caballeronia sordidicola [JNFG]
234463
234539
+
Gln
TTG
[ENA]
¡û
>W1910700233
MESI01000034
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
324
400
+
Gln
TTG
[ENA]
¡û
>W1910726015
MGPD01000016
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
32365
32289
-
Gln
TTG
[ENA]
¡û
>W1910744092
MHZY01000002
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
13103
13179
+
Gln
TTG
[ENA]
¡û
>W1910804564
MTHB01000261
Betaproteobacteria
Caballeronia sordidicola PAMC 26633 [MTHB]
25905
25981
+
Gln
TTG
[ENA]
¡û
>W1910942538
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
3015657
3015733
+
Gln
TTG
[ENA]
¡û
>W1911139395
NOXW01000019
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
200375
200299
-
Gln
TTG
[ENA]
¡û
>W1911498149
OCSX01000001
Betaproteobacteria
Burkholderia sp. D7 [OCSX]
690378
690302
-
Gln
TTG
[ENA]
¡û
>W1810305914
PTQY01000003
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
256842
256918
+
Gln
TTG
[ENA]
¡û
>W1810570305
QEII01000269
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
19970
20046
+
Gln
TTG
[ENA]
¡û
>W1810577636
QEOJ01000016
Betaproteobacteria
Rhodoferax sp. YR267 [QEOJ]
53058
52982
-
Gln
TTG
[ENA]
¡û
>W1810759424
QPJK01000002
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
348471
348547
+
Gln
TTG
[ENA]
¡û
>C161070779
CP014306
Betaproteobacteria
Burkholderia sp. PAMC 26561 [CP014306, CP014307, CP014315]
1558212
1558136
-
Gln
TTG
[Ensembl]
¡û
>C161073109
CP014505
Betaproteobacteria
Burkholderia sp. PAMC 28687 [CP014505, CP014506, CP014507]
146677
146601
-
Gln
TTG
[Ensembl]
¡û
>W1610206357
FCOC02000002
Betaproteobacteria
Caballeronia sordidicola [FCOC]
121374
121450
+
Gln
TTG
[ENA]
¡û
>W1610206799
FCOK02000051
Betaproteobacteria
Caballeronia udeis [FCOK]
64417
64493
+
Gln
TTG
[ENA]
¡û
>W1610735776
LMMT01000039
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
252007
251931
-
Gln
TTG
[ENA]
¡û
>W1610735865
LMMV01000022
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
323954
323878
-
Gln
TTG
[ENA]
¡û
>W1610736086
LMNA01000011
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
14660
14736
+
Gln
TTG
[ENA]
¡û
>W1610738781
LMPF01000020
Betaproteobacteria
Burkholderia sp. Leaf177 [LMPF]
41439
41515
+
Gln
TTG
[ENA]
¡û
>W1610781691
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
193483
193407
-
Gln
TTG
[ENA]
¡û
>W1710207488
FCOC02000002
Betaproteobacteria
Caballeronia sordidicola [FCOC]
121374
121450
+
Gln
TTG
[ENA]
¡û
>W1710207549
FCOK02000051
Betaproteobacteria
Caballeronia udeis [FCOK]
64417
64493
+
Gln
TTG
[ENA]
¡û
>W1710524808
FNJA01000002
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
840558
840482
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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