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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273592 (67 seq.)
>W1710877165
LMPW01000011
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
49705
49629
-
Thr
TGT
[ENA]
¡û
>W1710877166
LMPW01000012
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
84126
84200
+
Thr
TGT
[ENA]
¡û
>W1711047409
LROZ01000006
Bacteroidota
Myroides odoratus [LROZ]
151964
152040
+
Thr
TGT
[ENA]
¡û
>W1711047437
LROZ01000018
Bacteroidota
Myroides odoratus [LROZ]
55901
55825
-
Thr
TGT
[ENA]
¡û
>W1711505188
MKVG01000014
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
234898
234972
+
Thr
TGT
[ENA]
¡û
>W1711505205
MKVG01000020
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
47016
46940
-
Thr
TGT
[ENA]
¡û
>W131224671
AUCZ01000003
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
222003
221927
-
Thr
TGT
[ENA]
¡û
>W131225340
AUDM01000008
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
93879
93955
+
Thr
TGT
[ENA]
¡û
>W131225344
AUDM01000008
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
154123
154199
+
Thr
TGT
[ENA]
¡û
>W131229196
AUGP01000018
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
286547
286623
+
Thr
TGT
[ENA]
¡û
>C171016682
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3203922
3203998
+
Thr
TGT
-
¡û
>C171016683
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
3204203
3204279
+
Thr
TGT
-
¡û
>C171016704
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
1479291
1479215
-
Thr
TGT
-
¡û
>W141008071
AGZJ01000003
Bacteroidota
Myroides odoratus CIP 103059 [AGZJ]
37411
37487
+
Thr
TGT
[ENA]
¡û
>WENV180311199
OBJT01161845
[OBJT] soil metagenome; soil
57
131
+
Thr
TGT
[ENA]
¢þ
>W141093425
AVBI01000012
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
288198
288122
-
Thr
TGT
[ENA]
¡û
>W141093426
AVBI01000012
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
288064
287988
-
Thr
TGT
[ENA]
¡û
>W141093441
AVBI01000016
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
69762
69836
+
Thr
TGT
[ENA]
¡û
>W141096666
AVFO01000002
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
153095
153021
-
Thr
TGT
[ENA]
¡û
>W141096687
AVFO01000041
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
84372
84296
-
Thr
TGT
[ENA]
¡û
>W141096688
AVFO01000041
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
84238
84162
-
Thr
TGT
[ENA]
¡û
>W141097114
AVGG01000002
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
105995
105921
-
Thr
TGT
[ENA]
¡û
>W141097143
AVGG01000020
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
3638
3562
-
Thr
TGT
[ENA]
¡û
>WENV181312051
OFJB01036440
[OFJB] sludge metagenome; sludge
436
362
-
Thr
TGT
[ENA]
¢þ
>WENV181731194
OGQD01000126
[OGQD] human gut metagenome; faeces
15189
15263
+
Thr
TGT
[ENA]
¢þ
>WENV181731218
OGQD01000163
[OGQD] human gut metagenome; faeces
19736
19810
+
Thr
TGT
[ENA]
¢þ
>WENV181836817
OGVJ01032763
[OGVJ] freshwater metagenome; freshwater
318
392
+
Thr
TGT
[ENA]
¢þ
>WENV181838764
OGVN01016903
[OGVN] freshwater metagenome; freshwater
659
733
+
Thr
TGT
[ENA]
¢þ
>WENV181842542
OGVT01004766
[OGVT] freshwater metagenome; freshwater
712
638
-
Thr
TGT
[ENA]
¢þ
>WENV183736820
PJUD01000045
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
139285
139211
-
Thr
TGT
[ENA]
¢þ
>WENV183738595
PJUE01000034
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
139285
139211
-
Thr
TGT
[ENA]
¢þ
>WENV183739873
PJUF01000038
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
139285
139211
-
Thr
TGT
[ENA]
¢þ
>WENV170002587
AGTN01077116
[AGTN] bioreactor metagenome; poplar biomass
267
191
-
Thr
TGT
[ENA]
¢þ
>WENV170680817
LFEF01024391
[LFEF] freshwater metagenome; waterbloom
1401
1325
-
Thr
TGT
[ENA]
¢þ
>WENV170680899
LFEF01032856
[LFEF] freshwater metagenome; waterbloom
10517
10441
-
Thr
TGT
[ENA]
¢þ
>C181047475
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
2101870
2101944
+
Thr
TGT
-
¡û
>C181175889
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
1982876
1982950
+
Thr
TGT
-
¡û
>C181175923
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
194983
194909
-
Thr
TGT
-
¡û
>C181202214
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
4794769
4794843
+
Thr
TGT
-
¡û
>C181202236
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3098003
3097929
-
Thr
TGT
-
¡û
>W1911139424
NOXX01000064
Bacteroidota
Flavobacterium aurantiibacter TH167 [NOXX]
188
114
-
Thr
TGT
[ENA]
¡û
>W1810173551
PJND01000007
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
1376327
1376401
+
Thr
TGT
[ENA]
¡û
>W1810173578
PJND01000010
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
49861
49787
-
Thr
TGT
[ENA]
¡û
>W1810695891
QLSV01000008
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
25946
25872
-
Thr
TGT
[ENA]
¡û
>C161042838
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3203922
3203998
+
Thr
TGT
-
¡û
>C161042839
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
3204203
3204279
+
Thr
TGT
-
¡û
>C161042860
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
1479265
1479189
-
Thr
TGT
-
¡û
>W121034482
AHKQ01000018
Bacteroidota
Myroides odoratus DSM 2801 [AHKQ]
82269
82193
-
Thr
TGT
[ENA]
¡û
>W1610534965
JRLU01000001
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
490823
490897
+
Thr
TGT
[ENA]
¡û
>W1610534976
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
196245
196321
+
Thr
TGT
[ENA]
¡û
>W1610534977
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
196379
196455
+
Thr
TGT
[ENA]
¡û
>W1610535130
JRLY01000005
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
266833
266909
+
Thr
TGT
[ENA]
¡û
>W1610739511
LMPW01000011
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
49705
49629
-
Thr
TGT
[ENA]
¡û
>W1610739512
LMPW01000012
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
84126
84200
+
Thr
TGT
[ENA]
¡û
>W1610888538
LROZ01000006
Bacteroidota
Myroides odoratus [LROZ]
151964
152040
+
Thr
TGT
[ENA]
¡û
>W1610888566
LROZ01000018
Bacteroidota
Myroides odoratus [LROZ]
55901
55825
-
Thr
TGT
[ENA]
¡û
>W1710505771
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
250208
250134
-
Thr
TGT
[ENA]
¡û
>W1710505783
FMTY01000003
Bacteroidota
Flavobacterium saliperosum [FMTY]
220238
220314
+
Thr
TGT
[ENA]
¡û
>W1710505784
FMTY01000003
Bacteroidota
Flavobacterium saliperosum [FMTY]
220372
220448
+
Thr
TGT
[ENA]
¡û
>W1710507356
FMVF01000005
Bacteroidota
Flavobacterium caeni [FMVF]
221978
222054
+
Thr
TGT
[ENA]
¡û
>W1710507372
FMVF01000012
Bacteroidota
Flavobacterium caeni [FMVF]
18104
18028
-
Thr
TGT
[ENA]
¡û
>W1710574102
FOYA01000002
Bacteroidota
Flavobacterium akiainvivens [FOYA]
395579
395655
+
Thr
TGT
[ENA]
¡û
>W1710574121
FOYA01000007
Bacteroidota
Flavobacterium akiainvivens [FOYA]
180003
180079
+
Thr
TGT
[ENA]
¡û
>W1710637201
JRLU01000001
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
490823
490897
+
Thr
TGT
[ENA]
¡û
>W1710637212
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
196245
196321
+
Thr
TGT
[ENA]
¡û
>W1710637213
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
196379
196455
+
Thr
TGT
[ENA]
¡û
>W1710637366
JRLY01000005
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
266833
266909
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK