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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273596 (109 seq.)
>W1710857556
LMAJ01000004
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
31293
31369
+
Arg
TCT
[ENA]
¡û
>W1710862234
LMEF01000030
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
207577
207653
+
Arg
TCT
[ENA]
¡û
>W1710866917
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
1092708
1092784
+
Arg
TCT
[ENA]
¡û
>W1710868412
LMJB01000001
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
333901
333827
-
Arg
TCT
[ENA]
¡û
>W1710872505
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
289244
289170
-
Arg
TCT
[ENA]
¡û
>W1710877188
LMPW01000015
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
262032
262108
+
Arg
TCT
[ENA]
¡û
>W1711088284
LSYT01000004
Bacteroidota
Flavobacterium chilense [LSYT]
106915
106839
-
Arg
TCT
[ENA]
¡û
>W1711138924
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
113432
113358
-
Arg
TCT
[ENA]
¡û
>W1711138925
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
113237
113161
-
Arg
TCT
[ENA]
¡û
>W1711431899
MIKE01000023
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
11708
11632
-
Arg
TCT
[ENA]
¡û
>W1711431925
MIKE01000029
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
214771
214695
-
Arg
TCT
[ENA]
¡û
>W1711505174
MKVG01000004
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
121804
121728
-
Arg
TCT
[ENA]
¡û
>W1711513091
MLFK01000013
Bacteroidota
Flavobacterium johnsoniae [MLFK]
75541
75467
-
Arg
TCT
[ENA]
¡û
>W1711744079
MUFX01000004
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
336781
336707
-
Arg
TCT
[ENA]
¡û
>W1711748538
MULJ01000001
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
317022
316948
-
Arg
TCT
[ENA]
¡û
>W1711748539
MULJ01000001
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
316827
316751
-
Arg
TCT
[ENA]
¡û
>W1711751650
MUNX01000136
Bacteroidota
Flavobacterium sp. A45 [MUNX]
448
522
+
Arg
TCT
[ENA]
¡û
>C171053202
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
3350855
3350931
+
Arg
TCT
-
¡û
>C171063327
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
3344856
3344932
+
Arg
TCT
-
¡û
>W131052321
AMYW01000007
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
18116
18040
-
Arg
TCT
[ENA]
¡û
>W131052330
AMYW01000024
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
83844
83768
-
Arg
TCT
[ENA]
¡û
>W131225283
AUDL01000007
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
136883
136807
-
Arg
TCT
[ENA]
¡û
>W131226966
AUEU01000002
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
14494
14420
-
Arg
TCT
[ENA]
¡û
>W131237963
AUSH01000084
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
170180
170106
-
Arg
TCT
[ENA]
¡û
>WENV181731807
OGQD01003778
[OGQD] human gut metagenome; faeces
4370
4444
+
Arg
TCT
[ENA]
¢þ
>W141289780
JARP01000006
Bacteroidota
Flavobacterium sp. KJJ [JARP]
184682
184758
+
Arg
TCT
[ENA]
¡û
>W141291940
JATV01000010
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
184931
184857
-
Arg
TCT
[ENA]
¡û
>WENV170022680
BCQK01035236
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
709
783
+
Arg
TCT
[ENA]
¢þ
>WENV170996162
MWWF01164144
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
189
113
-
Arg
TCT
[ENA]
¢þ
>WENV171003831
NNBV01001546
[NNBV] plant metagenome; symbiotic tissue sample KVS11
8328
8252
-
Arg
TCT
[ENA]
¢þ
>WENV171003832
NNBV01001546
[NNBV] plant metagenome; symbiotic tissue sample KVS11
8134
8060
-
Arg
TCT
[ENA]
¢þ
>C181047484
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
3302357
3302431
+
Arg
TCT
-
¡û
>C181176637
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
5330581
5330507
-
Arg
TCT
-
¡û
>C191025470
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
3843008
3842934
-
Arg
TCT
-
¡û
>C191155235
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
3794646
3794720
+
Arg
TCT
-
¡û
>W141727191
JNCP01000002
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
27742
27666
-
Arg
TCT
[ENA]
¡û
>W1910183292
BJNP01000008
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
124183
124109
-
Arg
TCT
[ENA]
¡û
>W1910547028
FZNL01000012
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
176781
176855
+
Arg
TCT
[ENA]
¡û
>W1910577892
JUIV01000001
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
567590
567664
+
Arg
TCT
[ENA]
¡û
>W1910805343
MTQF01000004
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
219732
219658
-
Arg
TCT
[ENA]
¡û
>W1910808842
MUGR01000020
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
37415
37489
+
Arg
TCT
[ENA]
¡û
>W1910808843
MUGR01000020
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
37534
37608
+
Arg
TCT
[ENA]
¡û
>W1910808898
MUGS01000029
Bacteroidota
Flavobacterium araucananum DSM 24704 [MUGS]
78828
78754
-
Arg
TCT
[ENA]
¡û
>W1910809031
MUGV01000013
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
76853
76779
-
Arg
TCT
[ENA]
¡û
>W1910809108
MUGW01000046
Bacteroidota
Flavobacterium hercynium DSM 18292 [MUGW]
37867
37941
+
Arg
TCT
[ENA]
¡û
>W1910809168
MUGX01000035
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
102417
102343
-
Arg
TCT
[ENA]
¡û
>W1910809169
MUGX01000035
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
102046
101972
-
Arg
TCT
[ENA]
¡û
>W1910809427
MUHC01000064
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
3619
3545
-
Arg
TCT
[ENA]
¡û
>W1910809428
MUHC01000064
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
3424
3350
-
Arg
TCT
[ENA]
¡û
>W1910809623
MUHG01000035
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
10851
10777
-
Arg
TCT
[ENA]
¡û
>W1910809651
MUHH01000018
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
419
493
+
Arg
TCT
[ENA]
¡û
>W1910809676
MUHH01000044
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
11227
11153
-
Arg
TCT
[ENA]
¡û
>W1911180834
NQOT01000465
Bacteroidota
Flavobacterium sp. IR1 [NQOT]
43035
43109
+
Arg
TCT
[ENA]
¡û
>W1911747552
QWDM01000007
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
136160
136234
+
Arg
TCT
[ENA]
¡û
>W1911747601
QWDN01000003
Bacteroidota
Flavobacterium circumlabens CCM 8828 [QWDN]
341828
341902
+
Arg
TCT
[ENA]
¡û
>W1810071586
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
1278640
1278566
-
Arg
TCT
[ENA]
¡û
>W1810071587
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
1278388
1278314
-
Arg
TCT
[ENA]
¡û
>W1810089355
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2029110
2029036
-
Arg
TCT
[ENA]
¡û
>W1810121201
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
48460
48386
-
Arg
TCT
[ENA]
¡û
>W1810173575
PJND01000009
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
99018
98944
-
Arg
TCT
[ENA]
¡û
>W1810265864
PQVG01000005
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
160619
160545
-
Arg
TCT
[ENA]
¡û
>SRA1004220
SRR002328.206353
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
151
75
-
Arg
TCT
[SRA]
>W1810530612
QCWV01000007
Bacteroidota
Flavobacterium sp. WLB [QCWV]
20850
20776
-
Arg
TCT
[ENA]
¡û
>W1810577032
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
59423
59349
-
Arg
TCT
[ENA]
¡û
>W1810580578
QETH01000072
Bacteroidota
Flavobacterium sp. HTF [QETH]
19955
19881
-
Arg
TCT
[ENA]
¡û
>W1810596061
QGGJ01000005
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
161663
161737
+
Arg
TCT
[ENA]
¡û
>W1810657135
QJGZ01000042
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
92054
91980
-
Arg
TCT
[ENA]
¡û
>W1810657745
QJHK01000007
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
131004
130930
-
Arg
TCT
[ENA]
¡û
>W1810669713
QJRH01000068
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
85935
85861
-
Arg
TCT
[ENA]
¡û
>W1810669763
QJRI01000180
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
261839
261913
+
Arg
TCT
[ENA]
¡û
>W1810672652
QJTO01000003
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
419561
419635
+
Arg
TCT
[ENA]
¡û
>W1810672682
QJTO01000021
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
112084
112010
-
Arg
TCT
[ENA]
¡û
>W1810676045
QKLS01000003
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
419560
419634
+
Arg
TCT
[ENA]
¡û
>W1810676075
QKLS01000020
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
111375
111301
-
Arg
TCT
[ENA]
¡û
>W1810684406
QKXH01000007
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
189561
189635
+
Arg
TCT
[ENA]
¡û
>W1810885449
QUNI01000004
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
287697
287623
-
Arg
TCT
[ENA]
¡û
>W1511312010
JPRK01000015
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
781
707
-
Arg
TCT
[ENA]
¡û
>W1511312011
JPRK01000015
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
410
334
-
Arg
TCT
[ENA]
¡û
>W1511656852
LEKS01000002
Bacteroidota
Flavobacterium sp. ABG [LEKS]
198523
198449
-
Arg
TCT
[ENA]
¡û
>W1511656853
LEKS01000002
Bacteroidota
Flavobacterium sp. ABG [LEKS]
198355
198279
-
Arg
TCT
[ENA]
¡û
>W121086522
AKJZ01000027
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
8085
8011
-
Arg
TCT
[ENA]
¡û
>W121103548
AKZQ01000038
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
56479
56555
+
Arg
TCT
[ENA]
¡û
>W1610521450
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
483397
483323
-
Arg
TCT
[ENA]
¡û
>W1610534886
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
585292
585366
+
Arg
TCT
[ENA]
¡û
>W1610719937
LMAJ01000004
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
31293
31369
+
Arg
TCT
[ENA]
¡û
>W1610724580
LMEF01000030
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
207577
207653
+
Arg
TCT
[ENA]
¡û
>W1610729263
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
1092708
1092784
+
Arg
TCT
[ENA]
¡û
>W1610730758
LMJB01000001
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
333901
333827
-
Arg
TCT
[ENA]
¡û
>W1610734851
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
289244
289170
-
Arg
TCT
[ENA]
¡û
>W1610739534
LMPW01000015
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
262032
262108
+
Arg
TCT
[ENA]
¡û
>W1610922823
LSYT01000004
Bacteroidota
Flavobacterium chilense [LSYT]
106915
106839
-
Arg
TCT
[ENA]
¡û
>W1610949932
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
113432
113358
-
Arg
TCT
[ENA]
¡û
>W1610949933
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
113237
113161
-
Arg
TCT
[ENA]
¡û
>WENV080152
AATO01009308
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
639
717
+
Arg
TCT
[ENA]
>W1710507242
FMVC01000004
Bacteroidota
Flavobacterium anhuiense [FMVC]
85147
85071
-
Arg
TCT
[ENA]
¡û
>W1710507350
FMVF01000003
Bacteroidota
Flavobacterium caeni [FMVF]
392032
392108
+
Arg
TCT
[ENA]
¡û
>W1710531655
FNPS01000002
Bacteroidota
Flavobacterium aquidurense [FNPS]
96406
96330
-
Arg
TCT
[ENA]
¡û
>W1710548009
FODK01000002
Bacteroidota
Flavobacterium sp. fv08 [FODK]
557461
557537
+
Arg
TCT
[ENA]
¡û
>W1710558992
FOMH01000003
Bacteroidota
Flavobacterium phragmitis [FOMH]
537
461
-
Arg
TCT
[ENA]
¡û
>W1710569858
FOUT01000006
Bacteroidota
Flavobacterium succinicans [FOUT]
202469
202395
-
Arg
TCT
[ENA]
¡û
>W1710585117
FQWC01000005
Bacteroidota
Flavobacterium defluvii [FQWC]
140741
140665
-
Arg
TCT
[ENA]
¡û
>W1710585281
FQWG01000008
Bacteroidota
Flavobacterium frigidimaris [FQWG]
97764
97690
-
Arg
TCT
[ENA]
¡û
>W1710585282
FQWG01000008
Bacteroidota
Flavobacterium frigidimaris [FQWG]
97645
97569
-
Arg
TCT
[ENA]
¡û
>W1710586060
FQWW01000003
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
557265
557341
+
Arg
TCT
[ENA]
¡û
>W1710591512
FRBT01000005
Bacteroidota
Flavobacterium chilense [FRBT]
302485
302561
+
Arg
TCT
[ENA]
¡û
>W1710591957
FRCC01000006
Bacteroidota
Flavobacterium flevense [FRCC]
135130
135206
+
Arg
TCT
[ENA]
¡û
>W1710620398
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
483397
483323
-
Arg
TCT
[ENA]
¡û
>W1710637122
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
585292
585366
+
Arg
TCT
[ENA]
¡û
>W1710756339
LIAC01000011
Bacteroidota
Flavobacterium sp. NLM [LIAC]
125617
125693
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK