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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273687 (37 seq.)
>W1710906995
LNOL01000025
Betaproteobacteria
Alcaligenes faecalis [LNOL]
108066
108142
+
Met
CAT
[ENA]
¡û
>W1711710503
MSZN01000011
Betaproteobacteria
Alcaligenes faecalis [MSZN]
62320
62244
-
Met
CAT
[ENA]
¡û
>W1711710554
MSZO01000007
Betaproteobacteria
Alcaligenes faecalis [MSZO]
126628
126704
+
Met
CAT
[ENA]
¡û
>W1711710620
MSZP01000007
Betaproteobacteria
Alcaligenes faecalis [MSZP]
116919
116843
-
Met
CAT
[ENA]
¡û
>W1711710656
MSZQ01000007
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
126245
126321
+
Met
CAT
[ENA]
¡û
>W1711710710
MSZR01000009
Betaproteobacteria
Alcaligenes faecalis [MSZR]
50913
50837
-
Met
CAT
[ENA]
¡û
>W1711711870
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
1705256
1705180
-
Met
CAT
[ENA]
¡û
>W131051769
AMXV01000021
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
18197
18273
+
Met
CAT
[ENA]
¡û
>W131223075
AUBT01000013
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
43397
43321
-
Met
CAT
[ENA]
¡û
>C171115502
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1395218
1395294
+
Met
CAT
-
¡û
>W141104405
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
1159694
1159618
-
Met
CAT
[ENA]
¡û
>W141237741
BBJQ01000010
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
14882
14806
-
Met
CAT
[ENA]
¡û
>WENV183733829
PJTY01032484
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
289
365
+
Met
CAT
[ENA]
¢þ
>WENV170645910
JQGF01000505
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
4904
4828
-
Met
CAT
[ENA]
¢þ
>WENV170655192
JTFN01010904
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
23
99
+
Met
CAT
[ENA]
¢þ
>WENV170655254
JTFN01014690
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2614
2538
-
Met
CAT
[ENA]
¢þ
>WENV170655647
JTFN01054494
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
565
489
-
Met
CAT
[ENA]
¢þ
>WENV170655934
JTFN01097679
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170656152
JTFO01001352
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
23
99
+
Met
CAT
[ENA]
¢þ
>WENV170656462
JTFO01017615
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
24
100
+
Met
CAT
[ENA]
¢þ
>WENV170657069
JTFO01076173
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170965856
MTEV01007400
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
118
42
-
Met
CAT
[ENA]
¢þ
>C181053220
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1349647
1349723
+
Met
CAT
-
¡û
>C181088579
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
1119523
1119599
+
Met
CAT
-
¡û
>C191085257
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1691719
1691795
+
Met
CAT
-
¡û
>C191091157
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3824647
3824723
+
Met
CAT
-
¡û
>C191113946
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
2394193
2394269
+
Met
CAT
-
¡û
>C191149643
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
3156519
3156595
+
Met
CAT
-
¡û
>W1810583908
QEXO01000004
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
126936
127012
+
Met
CAT
[ENA]
¡û
>W1511321007
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
131976
132052
+
Met
CAT
[ENA]
¡û
>W1511537493
JZBR01000009
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
713721
713645
-
Met
CAT
[ENA]
¡û
>C161051359
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3498344
3498420
+
Met
CAT
[Ensembl]
¡û
>W121091229
AKMR01000014
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
13829
13753
-
Met
CAT
[ENA]
¡û
>W1610093577
CYTB01000009
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
143016
143092
+
Met
CAT
[ENA]
¡û
>W1610766009
LNOL01000025
Betaproteobacteria
Alcaligenes faecalis [LNOL]
108066
108142
+
Met
CAT
[ENA]
¡û
>W1610921538
LSUO01000025
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
104179
104255
+
Met
CAT
[ENA]
¡û
>W1710082545
BDHG01000007
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
15002
14926
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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