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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273691 (37 seq.)
>W1710907009
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
342618
342542
-
Arg
ACG
[ENA]
¡û
>W1710995950
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
500165
500089
-
Arg
ACG
[ENA]
¡û
>W131051763
AMXV01000016
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
130087
130163
+
Arg
ACG
[ENA]
¡û
>W131223070
AUBT01000011
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
87155
87079
-
Arg
ACG
[ENA]
¡û
>W1711710500
MSZN01000009
Betaproteobacteria
Alcaligenes faecalis [MSZN]
136504
136580
+
Arg
ACG
[ENA]
¡û
>W1711710547
MSZO01000005
Betaproteobacteria
Alcaligenes faecalis [MSZO]
136489
136565
+
Arg
ACG
[ENA]
¡û
>W1711710609
MSZP01000005
Betaproteobacteria
Alcaligenes faecalis [MSZP]
158369
158293
-
Arg
ACG
[ENA]
¡û
>W1711710639
MSZQ01000002
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
158364
158288
-
Arg
ACG
[ENA]
¡û
>W1711710691
MSZR01000003
Betaproteobacteria
Alcaligenes faecalis [MSZR]
141629
141705
+
Arg
ACG
[ENA]
¡û
>W1711711885
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
195980
196056
+
Arg
ACG
[ENA]
¡û
>C171115536
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1091612
1091536
-
Arg
ACG
-
¡û
>W141104445
AVOG02000067
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
95888
95812
-
Arg
ACG
[ENA]
¡û
>W141237724
BBJQ01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
189619
189543
-
Arg
ACG
[ENA]
¡û
>WENV170645915
JQGF01000540
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
6329
6405
+
Arg
ACG
[ENA]
¢þ
>WENV170654982
JTFN01001043
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
562
638
+
Arg
ACG
[ENA]
¢þ
>WENV170655650
JTFN01054567
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
803
879
+
Arg
ACG
[ENA]
¢þ
>WENV170655715
JTFN01061509
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
578
654
+
Arg
ACG
[ENA]
¢þ
>WENV170655848
JTFN01083476
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
487
563
+
Arg
ACG
[ENA]
¢þ
>WENV170656212
JTFO01004831
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1807
1731
-
Arg
ACG
[ENA]
¢þ
>WENV170656213
JTFO01004831
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1006
930
-
Arg
ACG
[ENA]
¢þ
>WENV170657187
JTFO01098431
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
691
767
+
Arg
ACG
[ENA]
¢þ
>C181053255
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1020931
1020855
-
Arg
ACG
-
¡û
>C181088613
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
798514
798438
-
Arg
ACG
-
¡û
>C191085292
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1379815
1379739
-
Arg
ACG
-
¡û
>C191091164
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3534669
3534593
-
Arg
ACG
-
¡û
>C191113969
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
2073191
2073115
-
Arg
ACG
-
¡û
>C191149653
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2863077
2863001
-
Arg
ACG
-
¡û
>W1810583885
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
188004
188080
+
Arg
ACG
[ENA]
¡û
>W1511321022
JQCV01000004
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
197959
198035
+
Arg
ACG
[ENA]
¡û
>W1511537477
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
816247
816171
-
Arg
ACG
[ENA]
¡û
>C161051342
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1252255
1252331
+
Arg
ACG
[Ensembl]
¡û
>W121091207
AKMR01000009
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
159433
159509
+
Arg
ACG
[ENA]
¡û
>W1610093544
CYTB01000001
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
593164
593088
-
Arg
ACG
[ENA]
¡û
>W1610766023
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
342618
342542
-
Arg
ACG
[ENA]
¡û
>W1610850607
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
500165
500089
-
Arg
ACG
[ENA]
¡û
>W1610921549
LSUO01000030
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
23749
23673
-
Arg
ACG
[ENA]
¡û
>W1710082521
BDHG01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
592802
592726
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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